WormBase-Caltech Weekly Calls
From WormBaseWiki
2011 Meetings
2012 Meetings
January 5, 2012
Interactions patch
- One large scale paper omitted from upload
- Patch sent in; all OK
Integration of 3rd party data
- BioGRID, Gene Orienteer, Interolog database, etc.
- Gene Orienteer
- May only want interactions above a threshold
- Interolog database
- Get gene pages linked to their database
- Display data on gene pages, but keep display distinct?
- FlyBase links out to BioGRID, Interolog
- modEncode Transcription Regulatory Network display/diagrams?
New site release with WS230?
- About 2 months
Textpresso Interaction Sentences
- Now have sentences associated with interactions
- Need to discuss what sentences should be kept as adequate evidence of interaction and placed in remarks
- See if Textpresso can pull out paragraphs (or +/- 4 sentences?) for each sentence to see context
- Can we devise some automation to handle interaction updates?
