WormBase-Caltech Weekly Calls
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Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2018 Meetings
December 6, 2018
SObA for disease (& other ontology?) annotations
- Next Alliance all-hands call in February, present SObA for Skunkworks (innovation talks)?
- SObA top-slicing (summary view) gets tricky; Raymond looking into better solutions, if available
- SObA summary could be redundant with ribbon? SObA would provide dynamic, trimmed nodes
Worm phenotype ontology
- Meeting today at 12pm Pacific, 3pm Eastern
- In process of adding back obsolete terms to the ontology
- Question about "has_obo_namespace" attribute; not required for ODK process; used by WB pipelines?
ISB Meeting, Cambridge, UK, April 2019
- Abstracts from WB?
- New Author First Pass - Daniela, Valerio, Kimberly, et al.
- Automated gene descriptions - Ranjana, gene description working group
GO expression data using Uberon anatomy terms
- Some GO curators curating C. elegans expression annotations (from synapse annotation project) to Uberon anatomy terms, not WBbt terms
- Kimberly will look into enforcing Noctua editor to use C. elegans anatomy ontology when creating C. elegans annotations
- Can possibly perform automated mapping if appropriate cross-references exist
- Kimberly has already found annotations to inappropriate Uberon terms