Difference between revisions of "WormBase-Caltech Weekly Calls"
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** Variants | ** Variants | ||
** Disease & Phenotype | ** Disease & Phenotype | ||
+ | ** Technical working groups | ||
+ | *** Technical call | ||
+ | *** Data quartermasters | ||
+ | *** DevOps | ||
+ | * Expression working group working on LinkML model with Gil (FB) | ||
+ | ** Includes work on antibody class, image class, movie class | ||
+ | * Are species-specific anatomy ontologies being utilized or still just Uberon? |
Revision as of 18:15, 8 July 2021
Contents
Previous Years
2021 Meetings
July 1, 2021
Importing genes for tm alleles from GeneACE
- https://github.com/WormBase/website/issues/8262
- Nightly dump currently excludes tm allele genes
- Most tm (Mitani) alleles are not being manually connected to specific genes in GeneACE
- Should pull the data from WS release (into Postgres) after the build has mapped the alleles to genes
- ~100,000 alleles in Postgres; ~70,000 don't have a gene connection
- Would Hinxton be willing to take WS-mapped allele-to-gene associations and populate GeneACE with associations not already in there?
Citace upload
- Curators upload files to Spica for citace upload on Tuesday (July 6)
Chen B1 kitchen Usage Considerations
- Clean up after oneself.
- Mark food storage with name and date.
- Mark storage drawers
- Consumables
July 8, 2021
Alliance work
- Orange team presenting initial plans at Alliance PI meeting tomorrow
- What working groups are still meeting? What are their responsibilities?
- Expression
- Variants
- Disease & Phenotype
- Technical working groups
- Technical call
- Data quartermasters
- DevOps
- Expression working group working on LinkML model with Gil (FB)
- Includes work on antibody class, image class, movie class
- Are species-specific anatomy ontologies being utilized or still just Uberon?