Difference between revisions of "WormBase-Caltech Weekly Calls"
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| non-nematode; Author-Person (pre-dated current Author-Person curation criteria) | | non-nematode; Author-Person (pre-dated current Author-Person curation criteria) | ||
| N/A | | N/A | ||
− | | Yes | + | | Yes |
− | | Used in legacy manual ceh-8 gene description | + | | Used in legacy, manual ceh-8 gene description |
| Used in human manual GO curation (Protein2GO) | | Used in human manual GO curation (Protein2GO) | ||
− | | 492 non-nematode papers; not systematically associated with species | + | | 492 non-nematode-flagged papers in WB; not systematically associated with species, but we could do that |
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Revision as of 15:34, 8 December 2020
Contents
Previous Years
2020 Meetings
Dec 3rd, 2020
Hench et al paper
- Thomas Burglin would like the data from paper 00046864 to be included in WB
- They want to provide APT profiles (signal intensity along the anterior-posterior axis over time) as images and movies (time lapse reporter expression)
- They have recorded movies for 60 homeobox genes and over 85 genes in total.
- If we decide to import the collection, movies, images, and description could be displayed as the collection from Murray: https://wormbase.org/species/all/expr_pattern/Expr10431#012--10
WormBase Papers and Alliance ABC - What papers to add?
- PubMed keyword search 'elegans' (Approve, Reject, Remove)
- Legacy papers from manual concise descriptions
PMID | Paper Editor Action | WBPaper ID | Paper Title | Species | Primary/Not Primary | Other Paper Editor Flags | Any SVM Positives | Add to ABC | Comments (1) | Comments (2) | Comments (3) |
---|---|---|---|---|---|---|---|---|---|---|---|
31761535 | Approve | 58971 | The Hyaluronidase, TMEM2, Promotes ER Homeostasis and Longevity Independent of the UPR ER | Homo sapiens, Caenorhabditis elegans | Primary | Author-Person | Catalytic Activity; Genetic Interactions; Gene Regulation; New Mutant Phenotype; Overexpression Phenotype; RNAi Phenotype | Yes | |||
31868179 | Approve | 58999 | Measuring the Effects of Bacteria and Chemicals on the Intestinal Permeability of Caenorhabditis elegans | Caenorhabditis elegans | Primary | Author-Person | None | Yes | |||
16919905 | Approve | 28426 | The trifecta of aging in Caenorhabditis elegans. | Caenorhabditis elegans | Not-primary | Author-Person | N/A | Yes | |||
28744338 | Approve | 51561 | Role of Kallistatin Treatment in Aging and Cancer by Modulating miR-34a and miR-21 Expression. | Caenorhabditis elegans, Homo sapiens (human, humans), Mus musculus (mice, mouse), Rattus norvegicus (rats) | Not-primary | Author-Person | N/A | Yes | |||
31875562 | Reject | None | Intracellular Vesicle Fusion Requires a Membrane-Destabilizing Peptide Located at the Juxtamembrane Region of the v-SNARE | Mus musculus (mouse), Rattus norvegicus (rat) | Primary | N/A | N/A | Not from WormBase, but if added from another group we'd want to indicate that it doesn't have C. elegans experimental data? | Paper shows partial sequence alignment including C. elegans snb-1 in Figure 1A; other species in alignment include M. musculus, H. sapiens, X. leavis, and D. melanogaster | PubMed indexes proteins and their respective species shown in sequence alignments | |
31569547 | Reject | None | Mapping the Biotransformation of Coumarins through Filamentous Fungi | Cunninghamella elegans, Aspergillus brasiliensis | Primary | N/A | N/A | No | |||
10625658 | Entry into WB pre-dated current paper editor | 12789 | Both PCE-1/RX and OTX/CRX interactions are necessary for photoreceptor-specific gene expression | Homo sapiens (human), Mus musculus (mouse, mice, murine), Rattus norvegicus (rat, rats), Bos taurus(bovine) | Primary | non-nematode; Author-Person (pre-dated current Author-Person curation criteria) | N/A | Yes | Used in legacy, manual ceh-8 gene description | Used in human manual GO curation (Protein2GO) | 492 non-nematode-flagged papers in WB; not systematically associated with species, but we could do that |
- /home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids - ~3300 papers
- /home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids - ~100 papers
- What about WormBase Parasite papers?