Difference between revisions of "What's staying in postgres?"

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##gst-10 - annotations will be added to uniprot manually using a doi as reference id and then deleted from postgres
 
##gst-10 - annotations will be added to uniprot manually using a doi as reference id and then deleted from postgres
 
##MTCE.26 - annotations will be added to uniprot manually - need to update gp2protein file, but also need to check on status of uniprot identifiers in xrefs.txt file for elegans mitochondrial proteins
 
##MTCE.26 - annotations will be added to uniprot manually - need to update gp2protein file, but also need to check on status of uniprot identifiers in xrefs.txt file for elegans mitochondrial proteins
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Back to [[Gene Ontology]]

Revision as of 20:57, 7 February 2013

For now, we will keep several types of annotations in postgres:

  1. ncRNA
  2. uncloned loci
  3. IEP evidence code
    1. IEP evidence code annotations made to proteins will eventually be manually deleted from postgres and entered into protein2go
  4. other specific annotations that have unique issues
    1. fox-1 annotations that have yDp13 in with/from - will need to work out with uniprot how to handle these
    2. jnk-1 and sir-2.1 annotations that have a WBTransgene in the with/from column - will need to work out with uniprot how to handle these
    3. Cre-vbh-1 annotations - will be added to uniprot manually and then deleted from postgres
    4. gst-10 - annotations will be added to uniprot manually using a doi as reference id and then deleted from postgres
    5. MTCE.26 - annotations will be added to uniprot manually - need to update gp2protein file, but also need to check on status of uniprot identifiers in xrefs.txt file for elegans mitochondrial proteins

Back to Gene Ontology