Difference between revisions of "WebDev 2016.04.12-Agenda and Minutes"
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==JBrowse== | ==JBrowse== | ||
− | * | + | * Finished work to change categories of several tracks in GBrowse; awaiting feedback and then will implement in JBrowse. |
− | * Improve track selection | + | * Improve jbrowse track selection with a plugin, between a simple vs detailed/full view--needs a proxy update to work fully. |
+ | ToDo: | ||
+ | - look into options to draw users attention to the new feature; perhaps a css addition that highlights "New!" | ||
==Website== | ==Website== | ||
+ | *LEGO | ||
+ | ** temporarily deployed at http://dev.wormbase.org:9004/, Kimberly shared with GO group for feedback | ||
+ | ** Last week: done fetching and render entity (node) information from WB REST API, resolved browser compatibility issue with Polyfill, color palette for drawing, tune animation.. | ||
+ | ** TODO this week: email GO group about whether their API could support some extra feature. | ||
+ | *Variation Vis | ||
+ | ** have been fixing things to get the correct CDS model showing. | ||
+ | ** TODO this week: get it working first, before tackle performence isssue | ||
==Intermine== | ==Intermine== | ||
+ | * Worked with Todd to get intermine accessible at http://intermine.wormbase.org/ | ||
+ | * applied patch for SQL injection as suggested by Intermine | ||
==Datomic & website migration== | ==Datomic & website migration== | ||
− | + | * Took the minimal necessary changes for website - Clojure API integration (this is in the branch feature/datomic-rest-api). | |
+ | ** So further Clojure API generally doesn't require code changes in website repo | ||
+ | ** Datomic-to-Clojure repo has been fully re-factored and ready for development | ||
+ | * Still waiting for Data for WS252 to be correct ( Matt has it converting right now - will likely be done running on Wednesday) | ||
==Docker== | ==Docker== | ||
+ | * we moved docker image storage to the mounted drive, so it won't use up root directory space | ||
+ | * building the image for WormBase/website has been built | ||
+ | * TODO this week: | ||
+ | ** testing running container from the image | ||
+ | ** creating documentation and a small get started tutorial for team |
Latest revision as of 14:45, 12 April 2016
Minutes for Web Dev Weekly Call (Apr 12, 2016)
JBrowse
- Finished work to change categories of several tracks in GBrowse; awaiting feedback and then will implement in JBrowse.
- Improve jbrowse track selection with a plugin, between a simple vs detailed/full view--needs a proxy update to work fully.
ToDo: - look into options to draw users attention to the new feature; perhaps a css addition that highlights "New!"
Website
- LEGO
- temporarily deployed at http://dev.wormbase.org:9004/, Kimberly shared with GO group for feedback
- Last week: done fetching and render entity (node) information from WB REST API, resolved browser compatibility issue with Polyfill, color palette for drawing, tune animation..
- TODO this week: email GO group about whether their API could support some extra feature.
- Variation Vis
- have been fixing things to get the correct CDS model showing.
- TODO this week: get it working first, before tackle performence isssue
Intermine
- Worked with Todd to get intermine accessible at http://intermine.wormbase.org/
- applied patch for SQL injection as suggested by Intermine
Datomic & website migration
- Took the minimal necessary changes for website - Clojure API integration (this is in the branch feature/datomic-rest-api).
- So further Clojure API generally doesn't require code changes in website repo
- Datomic-to-Clojure repo has been fully re-factored and ready for development
- Still waiting for Data for WS252 to be correct ( Matt has it converting right now - will likely be done running on Wednesday)
Docker
- we moved docker image storage to the mounted drive, so it won't use up root directory space
- building the image for WormBase/website has been built
- TODO this week:
- testing running container from the image
- creating documentation and a small get started tutorial for team