Difference between revisions of "WebDev 2013.10.25-Agenda and Minutes"
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** fixes needed on app side | ** fixes needed on app side | ||
*** will create issues for these | *** will create issues for these | ||
− | * Backend | + | * Abby: Backend |
* Joachim: Intermine & visualization & gbrowse | * Joachim: Intermine & visualization & gbrowse | ||
** start WS240 Intermine build | ** start WS240 Intermine build | ||
== 6. Open Table (all; 5 minutes) == | == 6. Open Table (all; 5 minutes) == |
Latest revision as of 15:50, 25 October 2013
Agenda
1. Administrative Update (Todd; 5 minutes)
2. InterMine handover status (JD, Joachim;15 minutes)
http://wiki.wormbase.org/index.php/Administration:Installing_WormMine
3. InterMine status (JD; 10 minutes)
- WS239 mine has been released, but I have discovered duplicate records caused by the addition of new species. The configuration has been updated, but a new build must be compiled. Until then, the mine will be rolled back to WS238.
- The process of automating second-degree ( record -> middleman record -> annotation ) is 50-75% done. Branch "upgrade-loader" contains work and can be found on git.
4. Discuss WS239 issues (all; 10 minutes)
- location hotfix ready
5. Define WS240 plans (all; 15 minutes)
6. Open Table (all; 5 minutes)
Minutes
1. Administrative Update (Todd; 5 minutes)
- 240 build underway
2. InterMine handover status (JD, Joachim;15 minutes)
- slowly, still haven't built everything
- bugs and other issues fixed along the way
- currently hanging for Joachim
- JD unsure of problem - never seen this
- JD: all code committed and available to Joachim
- committed progress on orthology work - in upgrade-loader branch
- WIki is being fleshed out
- Joachim: still a bit superficial. A lot of experimentation going on.
- JD: originally wrote it more generally - now adding specific commands/machines/etc
- Joachim: take documentation and run it yourself, fill in parts missing as you build the mine yourself again
- JD: creating graphic of all git branches and description of what they're used for
- Joachim: doing the actual build, once finished should be able to move it to production
- need to test if he can actually deploy the mine himself
- JD: added path to archived versions on wiki
- hoping for mine next week
3. InterMine status (JD; 10 minutes)
- WS239 mine has been released, but I have discovered duplicate records caused by the addition of new species. The configuration has been updated, but a new build must be compiled. Until then, the mine will be rolled back to WS238.
- The process of automating second-degree ( record -> middleman record -> annotation ) is 50-75% done. Branch "upgrade-loader" contains work and can be found on git.
- JD: will rebuild today.
- should be finished by monday
- Todd: priority today - flesh out docs, help Joachim
4. Discuss WS239 issues (all; 10 minutes)
- location hotfix ready
- variation hotfix
- JD: finished all other assigned issues, except cell lineage.
- Cytoscape not the best tool.
- Will implement using existing lineage tool
- http://wormweb.org/celllineage#c=ABprpaaap&z=1
- on hold now
5. Define WS240 plans (all; 15 minutes)
TH Wish list:
- Move forward with knowledgebase idea
- biostars?
- phylogenetics people contacting biostars
- requested branding, better lookup
- we need a simplification of our process
- GFF3 - WS240
- support for files - KH fixed most issues from WS239
- Cloud - writing scripts
- fixes needed on app side
- will create issues for these
- fixes needed on app side
- Abby: Backend
- Joachim: Intermine & visualization & gbrowse
- start WS240 Intermine build