WebDev 2013.06.14-Agenda and Minutes
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Web app
- Proposal emailed to everyone
- TODO: set dev.wormbase.org to serve staging code
- stability
Error Trapping & Logging
- JB: logging separate form installation type
- log level on it's own
- Web.pm - reads installation_type/env var, loads specific log4perl file
- log4perl -
TODO: get rid of 'debug' flag
- JB will look at this after testing
- see issue for suggestions to expand
Intermine Branding (AC)
1) Create accounts on behalf of users, store permanent token
2) Ask users to associate Google account (/openid)
3) Run Identity Server
- http://wiki.openid.net/w/page/12995226/Run%20your%20own%20identity%20server
- Perl - http://www.packetizer.com/security/openid/
Intermine (JD)
- running build over the weekend
- From Gary, provided ace queries:
- Gene - only get Live genes
- CDS - only method = curated
- Protein - only corresponding CDS
- Transcripts - attached to Genes, contains history? no ace query
- gary updated issue 1385!
- Transcripts - attached to Genes, contains history? no ace query
- working on many intermine issues - many waiting on builds
- species list issue: 1405
Testing (JB)
- template for testing the REST.api
- t/live.t
- t/live_tests/template.t
- simple, baseline for tests and how to write them
- also wanted to do it for WormBase API
- do it on real objects, on the real databases (no mock objects!)
- need to start catalyst again, wanted to use inheritance w/ Moose,
- does not work with WormBase::Web :(
- will extend Web.pm, have hook to execute API tests
- to run on new data in acedb (catch data problems??!)