Difference between revisions of "WebDev 2009.10.21-Agenda and Minutes"
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== 4. modENCODE migration progress (Abby; 10 minutes) == | == 4. modENCODE migration progress (Abby; 10 minutes) == | ||
+ | * SAM/BAM data is displayed, using track sharing to show multiple tracks since each BAM file needs a separate config file | ||
+ | * However, shared tracks always zoomed in | ||
+ | LS: will be fixed<br> | ||
+ | * TH: will move to GB2 for WS209 early Dec | ||
+ | * Goal: have all modENCODE tracks on WormBase by data freeze via track sharing | ||
== 5. WormMart status and timeline (Zheng; 10 minutes) == | == 5. WormMart status and timeline (Zheng; 10 minutes) == |
Revision as of 17:20, 21 October 2009
Contents
Agenda
1. Administration (Todd, 5 minutes)
WS207 - in production
- some hardware problems with production notes -> will resolve shortly
- working on things for Friday meeting (postponed)
2. WS207 Development progress, paralog display (Norie; 10 minutes)
- Paralog sections to the orthology page
- Table of paralogs:
gathered biological processes annotations
listed in terms of diff/similarities to the gene
- Search algorithm for ontologies - diseases
- TH: incorporate obj to disease: search by these terms
- LS: Add treefam picture - link to txt (maybe mouseover to highlight paragraph)
3. nBrowse, pathway visualization progress (Xiaoqi; 10 minutes)
- Created pathway page w/ related reactome & nemapath info
linked through function section on gene page
Bannon site still blocked by firewall
LS: beta test Cytoscape lite along with nBrowse
ND: will install nBrowse 1 since no installation package for nBrowse2
- Updated bitbucket issues - TH will look at them
4. modENCODE migration progress (Abby; 10 minutes)
- SAM/BAM data is displayed, using track sharing to show multiple tracks since each BAM file needs a separate config file
- However, shared tracks always zoomed in
LS: will be fixed
- TH: will move to GB2 for WS209 early Dec
- Goal: have all modENCODE tracks on WormBase by data freeze via track sharing