Difference between revisions of "WBConfCall 2021.06.17-Agenda and Minutes"
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===Hinxton=== | ===Hinxton=== | ||
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+ | ===IWM 2021=== | ||
+ | *WB workshop schedule - Date: Tuesday, June 22, 11:30 am - 1 pm (EDT); 8.30 am - 10 am (PDT); | ||
+ | <pre style="white-space: pre-wrap; | ||
+ | white-space: -moz-pre-wrap; | ||
+ | white-space: -pre-wrap; | ||
+ | white-space: -o-pre-wrap; | ||
+ | word-wrap: break-word"> | ||
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+ | 11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase | ||
+ | |||
+ | 11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data | ||
+ | |||
+ | 12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources | ||
+ | |||
+ | 12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline | ||
+ | |||
+ | 12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A | ||
+ | |||
+ | </pre> | ||
+ | |||
+ | *WB 2021 workshop folder: https://drive.google.com/drive/u/1/folders/1v0JsMvWW4NNkrSu60U--cgZW_Gj-5P2Y | ||
+ | Presentations can go to this folder | ||
+ | |||
+ | *Chris, Ranjana, Magdalena, Kevin have the zoom instructions from GSA |
Revision as of 19:44, 16 June 2021
Contents
Help Desk
Open tickets:
Agenda and Minutes
WS281 issues
- Empty assemblies[] in the ASSEMBLIES.WS281.json file
- discordant feature names in Ace and GFF for (at least some) Tier III species
Caltech
CenGen data
- Initially discussed to have the bar plot images going in as image data
- CenGen group wants interactive bar plots similar to the modENCODE bar plots currently displayed in the FPKM expression data section on the expression widget. That way users could hover over a bar plot and see the cell type, the expression value (TPM, in our case) and the proportion of cells of each neuron type expressing the gene.
- They can provide the underlying data and have the WB team generate interactive plots for each gene
We could: 1. bring the data files in OR 2. call the CenGen API on the fly
- The first approach may be more work but better in the long run as we store the data
- Can the files be stored on the ftp and the plots be displayed on the expression widget?
- Bring in data both as pictures and interactive bar plots
Hinxton
IWM 2021
- WB workshop schedule - Date: Tuesday, June 22, 11:30 am - 1 pm (EDT); 8.30 am - 10 am (PDT);
11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase 11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data 12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources 12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline 12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A
- WB 2021 workshop folder: https://drive.google.com/drive/u/1/folders/1v0JsMvWW4NNkrSu60U--cgZW_Gj-5P2Y
Presentations can go to this folder
- Chris, Ranjana, Magdalena, Kevin have the zoom instructions from GSA