Difference between revisions of "WBConfCall 2021.05.20-Agenda and Minutes"
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# https://github.com/WormBase/website/issues/8228 | # https://github.com/WormBase/website/issues/8228 | ||
## file at this location (ftp://ftp.wormbase.org/pub/wormbase/releases/WS253/MULTI_SPECIES/hub/elegans/elegans_genes_WS253.bb) which contained each of the transcripts with exon start positions and lengths. not there now. user was Updating transcript bed file for CeNDR from WS253 to WS276 | ## file at this location (ftp://ftp.wormbase.org/pub/wormbase/releases/WS253/MULTI_SPECIES/hub/elegans/elegans_genes_WS253.bb) which contained each of the transcripts with exon start positions and lengths. not there now. user was Updating transcript bed file for CeNDR from WS253 to WS276 | ||
+ | ## Todd says we're not maintaining links to historical files. User was sent Michael Paulini's link. ftp.ebi.ac.uk/pub/databases/wormbase/releases/WS253/MULTI_SPECIES/hub/elegans/elegans_genes_WS253.bb | ||
= Agenda and Minutes= | = Agenda and Minutes= | ||
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Caltech: | Caltech: | ||
* Transgene >20% do we need a couple of sentences? | * Transgene >20% do we need a couple of sentences? | ||
+ | * Stavos building WS 281. Let him know what you'd like mentioned on the channel. | ||
+ | * Daniela says there's a lot more transgenes because constructs are becoming transgenic objects to align with Alliance. | ||
+ | * Magda: is there anything you'd like to showcase ? Daniela: not really, just data alignment, probably not interesting to users. | ||
+ | |||
Hinxton: | Hinxton: | ||
* Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946} | * Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946} | ||
* Replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}. | * Replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}. | ||
+ | * Ranjana: could do blog post about new species. | ||
+ | * Stavros will post on #general in slack. | ||
+ | * Paul D: We'll put something together when WS281 hits. | ||
** Ticket for genome browsers here: https://github.com/WormBase/website/issues/8229 | ** Ticket for genome browsers here: https://github.com/WormBase/website/issues/8229 | ||
== WB Genetics paper update == | == WB Genetics paper update == | ||
− | * | + | * Paul Davis looking to submit early September with the other AGR Mods. |
* Draft layout here: https://docs.google.com/document/d/1zBaGNtByCNJC8CxheKW_ewja5N1iyMzDBCu_JcYFXBE/edit?usp=sharing | * Draft layout here: https://docs.google.com/document/d/1zBaGNtByCNJC8CxheKW_ewja5N1iyMzDBCu_JcYFXBE/edit?usp=sharing | ||
− | * Please add comments | + | * Please add comments or additions to any of the Topic areas already listed. |
+ | * Needs to coordinate with other MODs in August, let's get this together before then. | ||
== Items == | == Items == | ||
# ... | # ... |
Latest revision as of 16:04, 20 May 2021
Contents
Help Desk
Open tickets:
- https://github.com/WormBase/website/issues/8228
- file at this location (ftp://ftp.wormbase.org/pub/wormbase/releases/WS253/MULTI_SPECIES/hub/elegans/elegans_genes_WS253.bb) which contained each of the transcripts with exon start positions and lengths. not there now. user was Updating transcript bed file for CeNDR from WS253 to WS276
- Todd says we're not maintaining links to historical files. User was sent Michael Paulini's link. ftp.ebi.ac.uk/pub/databases/wormbase/releases/WS253/MULTI_SPECIES/hub/elegans/elegans_genes_WS253.bb
Agenda and Minutes
WS281 New data for the release letter
Caltech:
- Transgene >20% do we need a couple of sentences?
- Stavos building WS 281. Let him know what you'd like mentioned on the channel.
- Daniela says there's a lot more transgenes because constructs are becoming transgenic objects to align with Alliance.
- Magda: is there anything you'd like to showcase ? Daniela: not really, just data alignment, probably not interesting to users.
Hinxton:
- Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946}
- Replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}.
- Ranjana: could do blog post about new species.
- Stavros will post on #general in slack.
- Paul D: We'll put something together when WS281 hits.
- Ticket for genome browsers here: https://github.com/WormBase/website/issues/8229
WB Genetics paper update
- Paul Davis looking to submit early September with the other AGR Mods.
- Draft layout here: https://docs.google.com/document/d/1zBaGNtByCNJC8CxheKW_ewja5N1iyMzDBCu_JcYFXBE/edit?usp=sharing
- Please add comments or additions to any of the Topic areas already listed.
- Needs to coordinate with other MODs in August, let's get this together before then.
Items
- ...