Difference between revisions of "WBConfCall 2020.05.06-Agenda and Minutes"
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==Agenda== | ==Agenda== | ||
+ | |||
+ | Note that there is a copy of this page at [[WBConfCall_2020.05.07-Agenda_and_Minutes]] (which is the date that the meeting actually occurred). | ||
+ | |||
+ | ====Staff changes at Hinxton==== | ||
+ | |||
+ | Welcom Mark QT! | ||
+ | |||
====Model changes for WS278==== | ====Model changes for WS278==== | ||
− | ==== | + | |
+ | ===== Disease data handling===== | ||
Ranjana proposed for WS278 | Ranjana proposed for WS278 | ||
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Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm | Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm | ||
− | I had to add a Disease_modifier_gene ?Gene XREF Modifies_disease tag | + | I had to add a Disease_modifier_gene ?Gene XREF Modifies_disease tag as missed a note on the wiki. |
− | Could you check | + | Could you check the model again Ranjana. |
− | ==== ECO code data model ==== | + | ===== ECO code data model ===== |
Kimberly proposed for WS278 | Kimberly proposed for WS278 | ||
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====WS278 build schedule==== | ====WS278 build schedule==== | ||
+ | ''Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.'' | ||
+ | |||
+ | Set up a slack channel to discuss this #build268. | ||
+ | |||
+ | * HX preference would be to push the WS278 release schedule back by 2 weeks | ||
+ | |||
+ | Adjusted Schedule to what was posted in the slack channel: | ||
+ | |||
+ | 29th May - Models freeze | ||
+ | 19th June - Upload | ||
+ | 22nd June-17th July - ACeDB production | ||
+ | 20th-24th July - Datomic migration | ||
+ | 24th July End Hinxton release and final handover to OICR | ||
+ | |||
+ | originally: | ||
+ | 15th May - Models freeze | ||
+ | 5th June - Upload | ||
+ | 8th June-3rd July - ACeDB production <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!> | ||
+ | 6th-10th July - Datomic migration | ||
+ | 10th July End Hinxton release and final handover to OICR | ||
====Outstanding issues==== | ====Outstanding issues==== | ||
− | [https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis | + | [https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis commented and reassigned to Michael P. who has also commented. |
− | [https://github.com/WormBase/website/issues/7637 #7637 Making retractions more visible] Kimberly Van Auken | + | [https://github.com/WormBase/website/issues/7637 #7637 Making retractions more visible] Kimberly Van Auken already commented. |
====Nice note about one recently closed issue==== | ====Nice note about one recently closed issue==== | ||
New build procedure for JBrowse pays off. | New build procedure for JBrowse pays off. |
Latest revision as of 17:04, 11 May 2020
Contents
Agenda
Note that there is a copy of this page at WBConfCall_2020.05.07-Agenda_and_Minutes (which is the date that the meeting actually occurred).
Staff changes at Hinxton
Welcom Mark QT!
Model changes for WS278
Disease data handling
Ranjana proposed for WS278
wiki here: https://wiki.wormbase.org/index.php/Model_changes_to_capture_and_consolidate_human_disease_data
Model has been incorporated: commit https://github.com/WormBase/wormbase-pipeline/commit/7b744319bd507b527d893f25e6a6dd5ac1766e9b
Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm
I had to add a Disease_modifier_gene ?Gene XREF Modifies_disease tag as missed a note on the wiki.
Could you check the model again Ranjana.
ECO code data model
Kimberly proposed for WS278
Wiki here: https://wiki.wormbase.org/index.php/Evidence_Code_Ontology
Ranjana had an additional Disease tag for this:
Evidence_code ECO_term ?ECO_term //new tag GO_code ?GO_code //old tag, but add “GO_code” in front of ?GO_code
Model has been incorporated: commit:https://github.com/WormBase/wormbase-pipeline/commit/b8e089f4ba148a2f006451c74b15ee0083304d48
Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm
WS278 build schedule
Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.
Set up a slack channel to discuss this #build268.
- HX preference would be to push the WS278 release schedule back by 2 weeks
Adjusted Schedule to what was posted in the slack channel:
29th May - Models freeze 19th June - Upload 22nd June-17th July - ACeDB production 20th-24th July - Datomic migration 24th July End Hinxton release and final handover to OICR
originally:
15th May - Models freeze 5th June - Upload 8th June-3rd July - ACeDB production <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!> 6th-10th July - Datomic migration 10th July End Hinxton release and final handover to OICR
Outstanding issues
#7663 Homology group Overview Widget Paul Davis commented and reassigned to Michael P. who has also commented.
#7637 Making retractions more visible Kimberly Van Auken already commented.
Nice note about one recently closed issue
New build procedure for JBrowse pays off.