Difference between revisions of "WBConfCall 2015.08.06-Agenda and Minutes"
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* ~180 GB | * ~180 GB | ||
* currently WS249 / will be updated to WS250 and the new intermine version for the WS250 release | * currently WS249 / will be updated to WS250 and the new intermine version for the WS250 release | ||
+ | * check the test instance | ||
+ | * decide which data classes to add next (and see if it is in github already as ticket) | ||
== WS250 / Hawaii == | == WS250 / Hawaii == |
Revision as of 16:05, 6 August 2015
Contents
Agenda
Intermine Status Update (Paulo Nuin and Sibyl)
Slides: http://wiki.wormbase.org/images/WormMine-v2.pdf
WS250
- news items for the release letter
- new worm: C.elegans (hawaii strain)
- will be used as reference release for other sites (EG, etc.)
Function vs Mutant
- Function vs Mutant Phenotype Gene Classes - Submissions to NCBI and EBI
- see email thread: Function vs. mutant phenotype gene classes
- categorise the gene classes
WS251 build dates
- Models freeze, data upload
WormMart End of Service
Now is time to unplug?
Minutes
Intermine
- Paolo (Alberta Health Services)
- runs off AWS
- total 1 week of building time first time (3/couple days for later attempts after optimisations)
- ~180 GB
- currently WS249 / will be updated to WS250 and the new intermine version for the WS250 release
- check the test instance
- decide which data classes to add next (and see if it is in github already as ticket)
WS250 / Hawaii
- will show up on the Genome Browsers
- with mapped gene models from N2
WS251 dates
- seems fine
- models 17th of September
- upload 2nd of October
- FTP 30th of October
- staging ~ 1st of December
- live ~ early January
WormMart End of Service
- will retire with WS251