WBConfCall 2014.04.03-Agenda and Minutes
From WormBaseWiki
Jump to navigationJump to searchAgenda
Minutes
Gene Association Files (GAFs)
- Anatomy, life stage, disease association files
- Kevin Howe will be generating these files, in general
- Will be difficult or impossible to abide by GAF rules exactly, but can work it out
- Column 6 needs to be resolved: Reference or WormBase object (WBPaper) [primary source of the association]
- Some anatomy terms are linked to multiple references, causes a problem
- Phenotypes don't always have a reference, causes a problem
- When we can't follow a publication, we reference a WB object
- Sometimes GO annotations do not have a paper, and so use a different reference object, method