Difference between revisions of "WBConfCall 2013.11.07-Agenda and Minutes"
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* ?Movie linking - Text in DB_INFO tag not indexed as it is just a reference to an external accession. | * ?Movie linking - Text in DB_INFO tag not indexed as it is just a reference to an external accession. | ||
* ?Expr_pattern - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag | * ?Expr_pattern - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag | ||
+ | * ?Gene_cluster - Karen would like to use this underused class for phylogenetic gene clusters | ||
+ | * ?Construct Class - A new class for storing Construct reagents used for generating Variation data | ||
== SAB 2014 == | == SAB 2014 == |
Revision as of 16:04, 6 November 2013
Agenda
Models for WS241
Summary:
- ?Person class - Database tag added for Orchid
- ?Interaction and ?Feature models - linking tags changed
- ?Movie linking - Text in DB_INFO tag not indexed as it is just a reference to an external accession.
- ?Expr_pattern - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag
- ?Gene_cluster - Karen would like to use this underused class for phylogenetic gene clusters
- ?Construct Class - A new class for storing Construct reagents used for generating Variation data
SAB 2014
- planning
- so far we have not followed through on this because Paul Sternberg has not been in the last two meetings.
- There are two options:
- New Year (January or February) at CalTech
- Later in the Spring at Hinxton
Themed Curation
- All of the genes for the protein unfolding pathways (including the orthologs in the core WormBase species) have been curated to improve their structures.
- There is a Google Docs page summarising the changes made (412 genes looked at. 72 structures modified. 118 new isoforms):
- https://docs.google.com/a/wormbase.org/spreadsheet/ccc?key=0AgGcFCavxqIRdGtvTDdpTGM5TndPSEFUbFVOeV9EOFE&usp=sharing
- Is any more curation required for the "protein unfolding pathways" themed curation?