Difference between revisions of "WBConfCall 2013.02.07-Agenda and Minutes"
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**2 provisional | **2 provisional | ||
***History_gene connections (multiple classes) - Chris | ***History_gene connections (multiple classes) - Chris | ||
− | ****Needs significant testing, | + | ****Chris will discuss with relevant curators and confirm with Paul |
+ | ****Needs significant testing, Chris will liaise with Paul. | ||
+ | ****probably bump to WS238 as there hasn't been any further discussion since call. | ||
***Feature_data - Gary | ***Feature_data - Gary | ||
****Mapping to a condition rather than via a method. | ****Mapping to a condition rather than via a method. | ||
****Needs testing as may have implications for acedb. | ****Needs testing as may have implications for acedb. | ||
+ | ****probably bump to WS238 as there hasn't been any further discussion since call. | ||
**6 scheduled for inclusion. | **6 scheduled for inclusion. | ||
***Accession class retirement continues | ***Accession class retirement continues | ||
− | ****Oligo_set mapping | + | ***homol_data - Kevin |
− | + | ****Oligo_set mapping as we do for other classes. | |
+ | ***Transgene - Karen | ||
+ | ****Construction_summary Text | ||
***Transcript - Paul | ***Transcript - Paul | ||
****Add biotype lincRNA. | ****Add biotype lincRNA. | ||
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***?YH & ?Gene_regulation retirement - Chris | ***?YH & ?Gene_regulation retirement - Chris | ||
****Complicated change as needs interaction adding in lots of classes. | ****Complicated change as needs interaction adding in lots of classes. | ||
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− | |||
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==David Miller cell specific expression data-tiling arrays== | ==David Miller cell specific expression data-tiling arrays== | ||
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Have the tiling array data been curated already? if so we can point him to SPELL. | Have the tiling array data been curated already? if so we can point him to SPELL. | ||
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+ | From discussions: | ||
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+ | Daniela will contact David and point him to the expression cluster page. Data will be in in 237. | ||
==Request from Caltech to expand release notes== | ==Request from Caltech to expand release notes== |
Latest revision as of 11:59, 15 February 2013
Contents
Models
- 8 models proposals for WS237 inclusion.
- 2 provisional
- History_gene connections (multiple classes) - Chris
- Chris will discuss with relevant curators and confirm with Paul
- Needs significant testing, Chris will liaise with Paul.
- probably bump to WS238 as there hasn't been any further discussion since call.
- Feature_data - Gary
- Mapping to a condition rather than via a method.
- Needs testing as may have implications for acedb.
- probably bump to WS238 as there hasn't been any further discussion since call.
- History_gene connections (multiple classes) - Chris
- 6 scheduled for inclusion.
- Accession class retirement continues
- homol_data - Kevin
- Oligo_set mapping as we do for other classes.
- Transgene - Karen
- Construction_summary Text
- Transcript - Paul
- Add biotype lincRNA.
- Oligo_set & Microarray_result - wen/kev
- Addition of ?Species
- ?YH & ?Gene_regulation retirement - Chris
- Complicated change as needs interaction adding in lots of classes.
- 2 provisional
David Miller cell specific expression data-tiling arrays
From Daniela: WS235 contains the links to WormViz in the anatomy page under the External links widget. David writes: "Although the link is certainly useful in this location its really buried and will not be noticed by most users. why not include a link to wormviz on the expression page for each gene?"
Have the tiling array data been curated already? if so we can point him to SPELL.
From discussions:
Daniela will contact David and point him to the expression cluster page. Data will be in in 237.
Request from Caltech to expand release notes
Caltech has been making a list of datatypes/objects that we would like numbers for, from each build, to be included in release notes. Is this something that Hinxton could do?
See http://wiki.wormbase.org/index.php/Release_note_requests
From discussions:
- Release notes should be aimed at user community, tag names and some numbers may not be interesting for them.
- We could generate a separate list for internal use, with all the statistics that curators want.
How to handle predicted interactions
- Take out all the predicted interactions from the gene page, instead include the link to the external databases that provide these--Gene Orienteer, WormNet etc.
- Data will be kept in acedb for purposes of Cytoscape?
WormMine
- There will be priority data sets that will be loaded first
- SGD has ready templates
- JD will give a demo of WormMine, Thursday 14th, at 8.30 PST