User Guide for Curators

User Guide for Textpresso for CCC Form

Where to Find the Form

• The form is currently located at:

http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/ccc/ccc.cgi

• Once we've finished initial testing, the form will be transferred over the our production server.

What We Need from Groups Using the Form

• Instructions on what papers to run through the CCC search and how often to search
• Any filtering steps, e.g. filter against current GAF, filter after Support Vector Machine data type classification

• A gpi (gene product information) file as specified by the GOC: gpad and gpi file format specifications. This allows us to map all gene products mentions in a paper to a MOD identifier and to a UniProtKB identifier so we can send annotations via web services to UniProt's Protein2GO tool.