Difference between revisions of "UniProtKB gpad to WormBase .ace"
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**/home/acedb/kimberly/citace_upload/go/gpad2ace | **/home/acedb/kimberly/citace_upload/go/gpad2ace | ||
**for example: /home/acedb/kimberly/citace_upload/go/gpad2ace/2015_February | **for example: /home/acedb/kimberly/citace_upload/go/gpad2ace/2015_February | ||
| + | |||
| + | *To convert the gpad file to a .ace file you'll need: | ||
| + | **gp2protein.wb file that maps UniProtKB IDs to WBGenes | ||
| + | **go_gpad_parser.pl | ||
Revision as of 19:14, 24 February 2015
- The gpad file that contains all of the C. elegans annotations currently in Protein2GO is produced by UniProtKB on a weekly basis.
- A new file is available every Monday.
- The file is located here: ftp://ftp.ebi.ac.uk/pub/contrib/goa/ and is named: gp_association.6239_wormbase.gz
- Download the file from the UniProtKB ftp link and put it on tazendra here (in the appropriate year and month directory):
- /home/acedb/kimberly/citace_upload/go/gpad2ace
- for example: /home/acedb/kimberly/citace_upload/go/gpad2ace/2015_February
- To convert the gpad file to a .ace file you'll need:
- gp2protein.wb file that maps UniProtKB IDs to WBGenes
- go_gpad_parser.pl
