Specifications for CCC Curation from Textpresso Search Page
From WormBaseWiki
Jump to navigationJump to searchRequirements for Using Textpresso Search Results in General CCC Curation
These specifications are for allowing a curator to search any Textpresso implementation using the CCC categories, submit the resulting sentences to a curation form, make annotations, and download the annotations in a gene_association file format.
This pipeline would make use of the XML format of a returned sentence. A partial XML verions of a sample sentences from WBPaper00037859
<textpresso_article> <bibliography> <literature>C. elegans</literature> <doc_id>WBPaper00037859</doc_id> <year>2010-11-29 </year> <type>Journal_article </type> <title>C . elegans galectins LEC-6 and LEC-10 interact with similar glycoconjugates in the intestine . </title> <journal>J Biol Chem </journal> <volume></volume> <page></page> <author>MaduziaLL</author> <author>YuE</author> <author>ZhangY</author> <accession>PMID 21115491 </accession> <abstract>Galectins are a family of metazoan proteins that show binding to various -galactoside-containing glycans . Due to a lack of proper tools , the interaction of galectins with their specific glycan ligands in the cells and it issues are largely unknown . We have investigated the localization of galectin ligands in Caenorhabditis elegans using a novel technology that relies on the high binding specificity between galectins and their endogenous ligands . Fluorescently-labeled recombinant galectin fusions are found to bind to ligands located in diverse it issues including the intestine , pharynx , and the rectal valve . Consistent with their role as galactoside-binding proteins , the interaction with their ligands is inhibited by galactose or lactose . Two of the galectins , LEC-6 and LEC-10 , recognize ligands that co-localize along the intestinal lumen . The ligands for LEC-6 and LEC-10 are absent in three glycosylation mutants bre-1 , fut-8 and galt-1 , which have been shown to be required to synthesize the Gal-1 , 4-Fuc modifications of the core N-glycans unique to C . elegans and several other invertebrates . Both galectins pull down the same set of glycoproteins in a manner dependant on the presence of these carbohydrate modifications . Endogenous LEC-6 and LEC-10 are expressed in the intestinal cells , but they are localized to different subcellular compartments that do not appear to overlap with each other or with the location of their glycan targets . An altered subcellular distribution of these ligands is found in mutants lacking both galectins . These results suggest a model where LEC-6 and LEC-10 interact with glycoproteins through specific glycans to regulate their cellular fate . </abstract> </bibliography>
<matching_sentences> <field_references>
<sentence id="315" subscore="48">
<content>The intestinal lumen border is partially outlined in white . at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from Figure 1 A B C SNAP-LEC fusion protein expressed in E . coli SNAP LEC Single site labeling with fluorescent substrate Immobilizing to SNAP capture resin In situ detection Protein pull down 6xHis 1 5 pMoles 17 23 30 58 46 175 80 7 KDa 2 3 1 5 4 6 7 Coomassie Infra-Red 800 Nickel resin purification at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from Figure 2 Fluorescence Brightfield Intestine Rectal valve Spermatheca Buccal cavityGrinder Coelomocyte 25 um * SNAP-LEC-1 SNAP-LEC-11 SNAP-LEC-10 SNAP-LEC-9 SNAP-LEC-6 A B C D E F SNAP-CGL2 G at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from SNAP-LEC-6 IFB-2 ( MH33 ) Merge with DIC A C SNAP-LEC-10 IFB-2 ( MH33 ) Merge with DIC B Figure 3 SNAP-LEC-10 SNAP-LEC-6 Merge with DIC 10 um Nucleus IFB-2 Glycocalyx LEC-6 / -10 staining signal D Lumen at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from wt bre-1 fut-8 galt-1 Figure 4 A B No sugar Fucose Galactose Lactose 100 um bre-1 fut-8 galt-1 Fucose Mannose Galactose GlcNAc C Core N-Glycan Gal-1 , 4-Fuc at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from 175 80 KDa + - + - + - wt bre-1 fut-8 wt br e-1 fut-8 Lactose Input Pulldown with SNAP-LEC-6 A Figure 5 B Gene model Number of peptides identified by Mass-spec Predicted protein properties Bead LEC-6 LEC-6 LEC-10 LEC-10 Protein Domains Amino acids N- glycosylation sites - + - + - F28B4 . 3 0 3 40 0 27 CE07153 MD super family , C-type lectin , VWF type A 2229 12 F40F4 . 6 0 0 53 0 15 CE04536 MD super family , C-type lectin , VWF type A 2214 12 T25C12 . 3 0 0 26 0 12 CE40820 MD super family , C-type lectin , VWF type A 2103 F57F4 . 3 / 4 0 0 14 0 9 CE11342 CE11344 21 ET modules 2153 21 C F28B4 . 3 1 2229 aa 2000 1500 1000 500 MD MD vWFA vWFA CLEC MW MW 1 2 3 4 5 6 7 8 9 10 11 6 at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from 40 um * * wt lec-6lec-6 lec-10wt lec-10lec-6 lec-10 A Figure 6 Anti-LEC-6 IFB-2 ( MH33 ) Merge ( LEC-6 = green ) B D IFB-2 ( MH33 ) C Anti-LEC-6 Anti-LEC-10 LEC-6 : : GFP LEC-10 : : GFP 100 um 17 25 30 58 46 80 7 KDa E LEC-10 : : GFP DIC Merge ( GFP = Green ) Merge with DIC Merge with DIC Anti-LEC-10 Merge ( LEC-10 = green ) at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from lec-6 lec-6 ; lec-10 lec-10 wt SNAP-LEC-6 wt lec-6 ; lec-10 A B 40 um SNAP -LEC-6 SNAP -LEC-6 ( Green ) MH33 ( Red ) Figure 7 100 um MH33 at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from </content>
<anatomy_celegans start_pos="3" end_pos="4">intestinal lumen</anatomy_celegans>
<localization_experimental_082208 start_pos="7" end_pos="7">partially</localization_experimental_082208>
<spatial_relation start_pos="12" end_pos="12">at</spatial_relation>
<tables_and_figures start_pos="30" end_pos="30">Figure</tables_and_figures>
<anatomy_celegans start_pos="33" end_pos="33">B</anatomy_celegans>
<anatomy_celegans start_pos="34" end_pos="34">C</anatomy_celegans>
<consort start_pos="36" end_pos="36">fusion</consort>
<localization_experimental_082208 start_pos="36" end_pos="36">fusion</localization_experimental_082208>
<mf_int_assay_2009-11-25 start_pos="36" end_pos="36">fusion</mf_int_assay_2009-11-25>
<sequence start_pos="36" end_pos="36">fusion</sequence>
<localization_experimental_082208 start_pos="37" end_pos="37">protein</localization_experimental_082208>
<mf_int_assay_2009-11-25 start_pos="37" end_pos="37">protein</mf_int_assay_2009-11-25>
<molecular_function start_pos="37" end_pos="37">protein</molecular_function>
<sequence start_pos="37" end_pos="37">protein</sequence>
<biological_process start_pos="38" end_pos="38">expressed</biological_process>
<localization_verbs_082208 start_pos="38" end_pos="38">expressed</localization_verbs_082208>
<anatomy_celegans start_pos="40" end_pos="40">E</anatomy_celegans>
<organism start_pos="40" end_pos="42">E _PRD_ coli</organism>
<transporter_activity start_pos="43" end_pos="43">SNAP</transporter_activity>
<sequence start_pos="45" end_pos="45">Single</sequence>
<localization start_pos="46" end_pos="46">site</localization>
<mf_int_assay_2009-11-25 start_pos="46" end_pos="46">site</mf_int_assay_2009-11-25>
<sequence start_pos="46" end_pos="46">site</sequence>
<localization_verbs_082208 start_pos="47" end_pos="47">labeling</localization_verbs_082208>
<method start_pos="47" end_pos="47">labeling</method>
<localization_experimental_082208 start_pos="49" end_pos="49">fluorescent</localization_experimental_082208>
<transporter_activity start_pos="53" end_pos="53">SNAP</transporter_activity>
<localization_experimental_082208 start_pos="58" end_pos="58">detection</localization_experimental_082208>
<localization_experimental_082208 start_pos="59" end_pos="59">Protein</localization_experimental_082208>
<mf_int_assay_2009-11-25 start_pos="59" end_pos="59">Protein</mf_int_assay_2009-11-25>
<molecular_function start_pos="59" end_pos="59">Protein</molecular_function>
<sequence start_pos="59" end_pos="59">Protein</sequence>
<mf_int_verbs_2009-11-25 start_pos="60" end_pos="60">pull</mf_int_verbs_2009-11-25>
<mf_int_assay_2009-11-25 start_pos="61" end_pos="61">down</mf_int_assay_2009-11-25>
<mf_int_assay_2009-11-25 start_pos="62" end_pos="62">6xHis</mf_int_assay_2009-11-25>
<chemical_drug_2010-03-19 start_pos="85" end_pos="85">Nickel</chemical_drug_2010-03-19>
<method start_pos="87" end_pos="87">purification</method>
<spatial_relation start_pos="88" end_pos="88">at</spatial_relation>
<tables_and_figures start_pos="106" end_pos="106">Figure</tables_and_figures>
<localization_experimental_082208 start_pos="108" end_pos="108">Fluorescence</localization_experimental_082208>
<anatomy_celegans start_pos="110" end_pos="110">Intestine</anatomy_celegans>
<anatomy_dmelanogaster start_pos="110" end_pos="110">Intestine</anatomy_dmelanogaster>
<anatomy_dmelanogaster start_pos="111" end_pos="112">Rectal valve</anatomy_dmelanogaster>
<anatomy_celegans start_pos="113" end_pos="113">Spermatheca</anatomy_celegans>
<anatomy_celegans start_pos="116" end_pos="116">Coelomocyte</anatomy_celegans>
<anatomy_celegans start_pos="126" end_pos="126">B</anatomy_celegans>
<anatomy_celegans start_pos="127" end_pos="127">C</anatomy_celegans>
<anatomy_celegans start_pos="128" end_pos="128">D</anatomy_celegans>
<anatomy_celegans start_pos="129" end_pos="129">E</anatomy_celegans>
<anatomy_celegans start_pos="130" end_pos="130">F</anatomy_celegans>
<chemical_drug_2010-03-19 start_pos="130" end_pos="130">F</chemical_drug_2010-03-19>
<spatial_relation start_pos="133" end_pos="133">at</spatial_relation>
<molecular_function start_pos="152" end_pos="152">IFB-2</molecular_function>
<protein_celegans start_pos="152" end_pos="152">IFB-2</protein_celegans>
<anatomy_celegans start_pos="160" end_pos="160">C</anatomy_celegans>
<molecular_function start_pos="162" end_pos="162">IFB-2</molecular_function>
<protein_celegans start_pos="162" end_pos="162">IFB-2</protein_celegans>
<anatomy_celegans start_pos="169" end_pos="169">B</anatomy_celegans>
<tables_and_figures start_pos="170" end_pos="170">Figure</tables_and_figures>
<anatomy_celegans start_pos="179" end_pos="179">Nucleus</anatomy_celegans>
<cell_part start_pos="179" end_pos="179">Nucleus</cell_part>
<localization_cell_components_082208 start_pos="179" end_pos="179">Nucleus</localization_cell_components_082208>
<organelle start_pos="179" end_pos="179">Nucleus</organelle>
<molecular_function start_pos="180" end_pos="180">IFB-2</molecular_function>
<protein_celegans start_pos="180" end_pos="180">IFB-2</protein_celegans>
<cell_part start_pos="181" end_pos="181">Glycocalyx</cell_part>
<molecular_function start_pos="182" end_pos="182">LEC-6</molecular_function>
<protein_celegans start_pos="182" end_pos="182">LEC-6</protein_celegans>
<localization_experimental_082208 start_pos="185" end_pos="185">staining</localization_experimental_082208>
<localization_verbs_082208 start_pos="185" end_pos="185">staining</localization_verbs_082208>
<method start_pos="185" end_pos="185">staining</method>
<biological_process start_pos="186" end_pos="186">signal</biological_process>
<localization_experimental_082208 start_pos="186" end_pos="186">signal</localization_experimental_082208>
<anatomy_celegans start_pos="187" end_pos="187">D</anatomy_celegans>
<spatial_relation start_pos="189" end_pos="189">at</spatial_relation>
<phenotype_celegans start_pos="207" end_pos="207">wt</phenotype_celegans>
<gene_celegans start_pos="208" end_pos="208">bre-1</gene_celegans>
<gene_celegans start_pos="209" end_pos="209">fut-8</gene_celegans>
<gene_celegans start_pos="210" end_pos="210">galt-1</gene_celegans>
<tables_and_figures start_pos="211" end_pos="211">Figure</tables_and_figures>
<anatomy_celegans start_pos="214" end_pos="214">B</anatomy_celegans>
<gene_celegans start_pos="222" end_pos="222">bre-1</gene_celegans>
<gene_celegans start_pos="223" end_pos="223">fut-8</gene_celegans>
<gene_celegans start_pos="224" end_pos="224">galt-1</gene_celegans>
<anatomy_celegans start_pos="229" end_pos="229">C</anatomy_celegans>
<localization start_pos="230" end_pos="230">Core</localization>
<virion_part start_pos="230" end_pos="230">Core</virion_part>
<spatial_relation start_pos="235" end_pos="235">at</spatial_relation>
<phenotype_celegans start_pos="262" end_pos="262">wt</phenotype_celegans>
<gene_celegans start_pos="263" end_pos="263">bre-1</gene_celegans>
<gene_celegans start_pos="264" end_pos="264">fut-8</gene_celegans>
<phenotype_celegans start_pos="265" end_pos="265">wt</phenotype_celegans>
<gene_celegans start_pos="268" end_pos="268">fut-8</gene_celegans>
<mf_int_assay_2009-11-25 start_pos="271" end_pos="271">Pulldown</mf_int_assay_2009-11-25>
<tables_and_figures start_pos="275" end_pos="275">Figure</tables_and_figures>
<anatomy_celegans start_pos="277" end_pos="277">B</anatomy_celegans>
<gene start_pos="278" end_pos="278">Gene</gene>
<sequence start_pos="278" end_pos="278">Gene</sequence>
<localization_verbs_082208 start_pos="283" end_pos="283">identified</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="283" end_pos="283">identified</mf_int_verbs_2009-11-25>
<mf_int_verbs_2009-11-25 start_pos="286" end_pos="286">Predicted</mf_int_verbs_2009-11-25>
<sequence start_pos="286" end_pos="286">Predicted</sequence>
<localization_experimental_082208 start_pos="287" end_pos="287">protein</localization_experimental_082208>
<mf_int_assay_2009-11-25 start_pos="287" end_pos="287">protein</mf_int_assay_2009-11-25>
<molecular_function start_pos="287" end_pos="287">protein</molecular_function>
<sequence start_pos="287" end_pos="287">protein</sequence>
<molecular_function start_pos="290" end_pos="290">LEC-6</molecular_function>
<protein_celegans start_pos="290" end_pos="290">LEC-6</protein_celegans>
<molecular_function start_pos="291" end_pos="291">LEC-6</molecular_function>
<protein_celegans start_pos="291" end_pos="291">LEC-6</protein_celegans>
<protein_celegans start_pos="292" end_pos="292">LEC-10</protein_celegans>
<protein_celegans start_pos="293" end_pos="293">LEC-10</protein_celegans>
<localization_experimental_082208 start_pos="294" end_pos="294">Protein</localization_experimental_082208>
<mf_int_assay_2009-11-25 start_pos="294" end_pos="294">Protein</mf_int_assay_2009-11-25>
<molecular_function start_pos="294" end_pos="294">Protein</molecular_function>
<sequence start_pos="294" end_pos="294">Protein</sequence>
<entity_feature start_pos="295" end_pos="295">Domains</entity_feature>
<mf_int_assay_2009-11-25 start_pos="295" end_pos="295">Domains</mf_int_assay_2009-11-25>
<mf_int_assay_2009-11-25 start_pos="296" end_pos="296">Amino</mf_int_assay_2009-11-25>
<entity_feature start_pos="296" end_pos="297">Amino acids</entity_feature>
<localization start_pos="300" end_pos="300">sites</localization>
<mf_int_assay_2009-11-25 start_pos="300" end_pos="300">sites</mf_int_assay_2009-11-25>
<sequence start_pos="300" end_pos="300">sites</sequence>
<gene_celegans start_pos="306" end_pos="308">F28B4 _PRD_ 3</gene_celegans>
<protein_celegans start_pos="314" end_pos="314">CE07153</protein_celegans>
<binding start_pos="320" end_pos="320">lectin</binding>
<biological_adhesion start_pos="320" end_pos="320">lectin</biological_adhesion>
<cellular_process start_pos="320" end_pos="320">lectin</cellular_process>
<gene_celegans start_pos="327" end_pos="329">F40F4 _PRD_ 6</gene_celegans>
<protein_celegans start_pos="335" end_pos="335">CE04536</protein_celegans>
<binding start_pos="341" end_pos="341">lectin</binding>
<biological_adhesion start_pos="341" end_pos="341">lectin</biological_adhesion>
<cellular_process start_pos="341" end_pos="341">lectin</cellular_process>
<gene_celegans start_pos="348" end_pos="350">T25C12 _PRD_ 3</gene_celegans>
<protein_celegans start_pos="356" end_pos="356">CE40820</protein_celegans>
<binding start_pos="362" end_pos="362">lectin</binding>
<biological_adhesion start_pos="362" end_pos="362">lectin</biological_adhesion>
<cellular_process start_pos="362" end_pos="362">lectin</cellular_process>
<gene_celegans start_pos="368" end_pos="370">F57F4 _PRD_ 3</gene_celegans>
<protein_celegans start_pos="378" end_pos="378">CE11342</protein_celegans>
<protein_celegans start_pos="379" end_pos="379">CE11344</protein_celegans>
<anatomy_celegans start_pos="385" end_pos="385">C</anatomy_celegans>
<gene_celegans start_pos="386" end_pos="388">F28B4 _PRD_ 3</gene_celegans>
<spatial_relation start_pos="415" end_pos="415">at</spatial_relation>
<phenotype_celegans start_pos="437" end_pos="437">wt</phenotype_celegans>
<gene_celegans start_pos="441" end_pos="441">lec-10</gene_celegans>
<tables_and_figures start_pos="443" end_pos="443">Figure</tables_and_figures>
<molecular_function start_pos="446" end_pos="446">IFB-2</molecular_function>
<protein_celegans start_pos="446" end_pos="446">IFB-2</protein_celegans>
<molecular_function start_pos="452" end_pos="452">LEC-6</molecular_function>
<protein_celegans start_pos="452" end_pos="452">LEC-6</protein_celegans>
<anatomy_celegans start_pos="456" end_pos="456">B</anatomy_celegans>
<anatomy_celegans start_pos="457" end_pos="457">D</anatomy_celegans>
<molecular_function start_pos="458" end_pos="458">IFB-2</molecular_function>
<protein_celegans start_pos="458" end_pos="458">IFB-2</protein_celegans>
<anatomy_celegans start_pos="462" end_pos="462">C</anatomy_celegans>
<molecular_function start_pos="465" end_pos="465">LEC-6</molecular_function>
<protein_celegans start_pos="465" end_pos="465">LEC-6</protein_celegans>
<localization_experimental_082208 start_pos="468" end_pos="468">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="468" end_pos="468">GFP</reporter_gene_celegans>
<protein_celegans start_pos="469" end_pos="469">LEC-10</protein_celegans>
<localization_experimental_082208 start_pos="472" end_pos="472">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="472" end_pos="472">GFP</reporter_gene_celegans>
<anatomy_celegans start_pos="483" end_pos="483">E</anatomy_celegans>
<protein_celegans start_pos="484" end_pos="484">LEC-10</protein_celegans>
<localization_experimental_082208 start_pos="487" end_pos="487">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="487" end_pos="487">GFP</reporter_gene_celegans>
<localization_experimental_082208 start_pos="491" end_pos="491">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="491" end_pos="491">GFP</reporter_gene_celegans>
<protein_celegans start_pos="504" end_pos="504">LEC-10</protein_celegans>
<spatial_relation start_pos="508" end_pos="508">at</spatial_relation>
<gene_celegans start_pos="526" end_pos="526">lec-6</gene_celegans>
<gene_celegans start_pos="527" end_pos="527">lec-6</gene_celegans>
<gene_celegans start_pos="529" end_pos="529">lec-10</gene_celegans>
<gene_celegans start_pos="530" end_pos="530">lec-10</gene_celegans>
<phenotype_celegans start_pos="531" end_pos="531">wt</phenotype_celegans>
<phenotype_celegans start_pos="533" end_pos="533">wt</phenotype_celegans>
<gene_celegans start_pos="534" end_pos="534">lec-6</gene_celegans>
<gene_celegans start_pos="536" end_pos="536">lec-10</gene_celegans>
<anatomy_celegans start_pos="538" end_pos="538">B</anatomy_celegans>
<transporter_activity start_pos="541" end_pos="541">SNAP</transporter_activity>
<transporter_activity start_pos="543" end_pos="543">SNAP</transporter_activity>
<localization_experimental_082208 start_pos="550" end_pos="550">Red</localization_experimental_082208>
<tables_and_figures start_pos="552" end_pos="552">Figure</tables_and_figures>
<spatial_relation start_pos="557" end_pos="557">at</spatial_relation>
</sentence>
</field_references>
<field_results>
<sentence id="78" subscore="15">
<content>Closer examination reveals that some LEC-10 : : GFP at CALIFORNIA INSTITUTE OF TECHNOLOGY , on December 9 , 2010 www . jbc . org Downloaded from 8 signal is concentrated in vesicular structures in the apical cytoplasm of the intestinal cells ( Figure 6C ) while LEC-6 : : GFP signal is mostly diffuse in the cytoplasm . </content>
<spatial_relation start_pos="2" end_pos="2">Closer</spatial_relation>
<localization_experimental_082208 start_pos="3" end_pos="3">examination</localization_experimental_082208>
<localization_verbs_082208 start_pos="4" end_pos="4">reveals</localization_verbs_082208>
<protein_celegans start_pos="7" end_pos="7">LEC-10</protein_celegans>
<localization_experimental_082208 start_pos="10" end_pos="10">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="10" end_pos="10">GFP</reporter_gene_celegans>
<spatial_relation start_pos="11" end_pos="11">at</spatial_relation>
<biological_process start_pos="30" end_pos="30">signal</biological_process>
<localization_experimental_082208 start_pos="30" end_pos="30">signal</localization_experimental_082208>
<localization_verbs_082208 start_pos="32" end_pos="32">concentrated</localization_verbs_082208>
<localization_cell_components_082208 start_pos="34" end_pos="34">vesicular</localization_cell_components_082208>
<localization start_pos="38" end_pos="38">apical</localization>
<localization_cell_components_082208 start_pos="38" end_pos="38">apical</localization_cell_components_082208>
<cell_part start_pos="39" end_pos="39">cytoplasm</cell_part>
<localization_cell_components_082208 start_pos="39" end_pos="39">cytoplasm</localization_cell_components_082208>
<anatomy_celegans start_pos="42" end_pos="43">intestinal cells</anatomy_celegans>
<anatomy start_pos="43" end_pos="43">cells</anatomy>
<cell start_pos="43" end_pos="43">cells</cell>
<tables_and_figures start_pos="45" end_pos="45">Figure</tables_and_figures>
<molecular_function start_pos="49" end_pos="49">LEC-6</molecular_function>
<protein_celegans start_pos="49" end_pos="49">LEC-6</protein_celegans>
<localization_experimental_082208 start_pos="52" end_pos="52">GFP</localization_experimental_082208>
<reporter_gene_celegans start_pos="52" end_pos="52">GFP</reporter_gene_celegans>
<biological_process start_pos="53" end_pos="53">signal</biological_process>
<localization_experimental_082208 start_pos="53" end_pos="53">signal</localization_experimental_082208>
<biological_process start_pos="56" end_pos="56">diffuse</biological_process>
<localization_experimental_082208 start_pos="56" end_pos="56">diffuse</localization_experimental_082208>
<cell_part start_pos="59" end_pos="59">cytoplasm</cell_part>
<localization_cell_components_082208 start_pos="59" end_pos="59">cytoplasm</localization_cell_components_082208>
</sentence>
<sentence id="23" subscore="10">
<content>CGL2 shows intestinal lumen staining as well as a diffuse cytoplasmic staining throughout the intestinal cells ( Figure 2F ) similar to that of LEC-9 . </content>
<localization_verbs_082208 start_pos="3" end_pos="3">shows</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="3" end_pos="3">shows</mf_int_verbs_2009-11-25>
<anatomy_celegans start_pos="4" end_pos="5">intestinal lumen</anatomy_celegans>
<localization_experimental_082208 start_pos="6" end_pos="6">staining</localization_experimental_082208>
<localization_verbs_082208 start_pos="6" end_pos="6">staining</localization_verbs_082208>
<method start_pos="6" end_pos="6">staining</method>
<biological_process start_pos="11" end_pos="11">diffuse</biological_process>
<localization_experimental_082208 start_pos="11" end_pos="11">diffuse</localization_experimental_082208>
<localization_cell_components_082208 start_pos="12" end_pos="12">cytoplasmic</localization_cell_components_082208>
<localization_experimental_082208 start_pos="13" end_pos="13">staining</localization_experimental_082208>
<localization_verbs_082208 start_pos="13" end_pos="13">staining</localization_verbs_082208>
<method start_pos="13" end_pos="13">staining</method>
<localization_experimental_082208 start_pos="14" end_pos="14">throughout</localization_experimental_082208>
<anatomy_celegans start_pos="16" end_pos="17">intestinal cells</anatomy_celegans>
<anatomy start_pos="17" end_pos="17">cells</anatomy>
<cell start_pos="17" end_pos="17">cells</cell>
<tables_and_figures start_pos="19" end_pos="19">Figure</tables_and_figures>
<comparison start_pos="22" end_pos="22">similar</comparison>
<molecular_function start_pos="26" end_pos="26">LEC-9</molecular_function>
<protein_celegans start_pos="26" end_pos="26">LEC-9</protein_celegans>
</sentence>
<sentence id="22" subscore="9">
<content>LEC-9 and LEC-11 show relatively abundant but diffuse signal in the cytoplasm of the intestinal cells ( Figure 2C and E ) as compared to the other fusions . </content>
<molecular_function start_pos="2" end_pos="2">LEC-9</molecular_function>
<protein_celegans start_pos="2" end_pos="2">LEC-9</protein_celegans>
<protein_celegans start_pos="4" end_pos="4">LEC-11</protein_celegans>
<localization_verbs_082208 start_pos="5" end_pos="5">show</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="5" end_pos="5">show</mf_int_verbs_2009-11-25>
<biological_process start_pos="9" end_pos="9">diffuse</biological_process>
<localization_experimental_082208 start_pos="9" end_pos="9">diffuse</localization_experimental_082208>
<biological_process start_pos="10" end_pos="10">signal</biological_process>
<localization_experimental_082208 start_pos="10" end_pos="10">signal</localization_experimental_082208>
<cell_part start_pos="13" end_pos="13">cytoplasm</cell_part>
<localization_cell_components_082208 start_pos="13" end_pos="13">cytoplasm</localization_cell_components_082208>
<anatomy_celegans start_pos="16" end_pos="17">intestinal cells</anatomy_celegans>
<anatomy start_pos="17" end_pos="17">cells</anatomy>
<cell start_pos="17" end_pos="17">cells</cell>
<tables_and_figures start_pos="19" end_pos="19">Figure</tables_and_figures>
<anatomy_celegans start_pos="22" end_pos="22">E</anatomy_celegans>
<comparison start_pos="25" end_pos="25">compared</comparison>
<localization_verbs_082208 start_pos="25" end_pos="25">compared</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="25" end_pos="25">compared</mf_int_verbs_2009-11-25>
<consort start_pos="29" end_pos="29">fusions</consort>
<localization_experimental_082208 start_pos="29" end_pos="29">fusions</localization_experimental_082208>
<sequence start_pos="29" end_pos="29">fusions</sequence>
</sentence>
<sentence id="87" subscore="7">
<content>This LEC-10 containing region occupy a similar subcellular region where the LEC-10 : : GFP-containing vesicular structures are found ( compare Figure 6C and E ) . </content>
<protein_celegans start_pos="3" end_pos="3">LEC-10</protein_celegans>
<characterization start_pos="4" end_pos="4">containing</characterization>
<localization_verbs_082208 start_pos="4" end_pos="4">containing</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="4" end_pos="4">containing</mf_int_verbs_2009-11-25>
<localization start_pos="5" end_pos="5">region</localization>
<mf_int_assay_2009-11-25 start_pos="5" end_pos="5">region</mf_int_assay_2009-11-25>
<sequence start_pos="5" end_pos="5">region</sequence>
<comparison start_pos="8" end_pos="8">similar</comparison>
<localization_experimental_082208 start_pos="9" end_pos="9">subcellular</localization_experimental_082208>
<localization start_pos="10" end_pos="10">region</localization>
<mf_int_assay_2009-11-25 start_pos="10" end_pos="10">region</mf_int_assay_2009-11-25>
<sequence start_pos="10" end_pos="10">region</sequence>
<protein_celegans start_pos="13" end_pos="13">LEC-10</protein_celegans>
<localization_cell_components_082208 start_pos="17" end_pos="17">vesicular</localization_cell_components_082208>
<localization_verbs_082208 start_pos="20" end_pos="20">found</localization_verbs_082208>
<mf_int_verbs_2009-11-25 start_pos="20" end_pos="20">found</mf_int_verbs_2009-11-25>
<comparison start_pos="22" end_pos="22">compare</comparison>
<mf_int_verbs_2009-11-25 start_pos="22" end_pos="22">compare</mf_int_verbs_2009-11-25>
<tables_and_figures start_pos="23" end_pos="23">Figure</tables_and_figures>
<anatomy_celegans start_pos="26" end_pos="26">E</anatomy_celegans>
</sentence>
</field_results>
</matching_sentences>
</textpresso_article> </singleresult>
</textpresso_output>
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