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- == 1. Model and View development (Norie, Adrian; 10 minutes) == ...orking on pictures, working on mapping, new file under Wormbase API called model map: Oligo, Sequence, Anatomy698 bytes (98 words) - 20:11, 23 March 2011
- [[WormBase Models]] == Model ==206 bytes (28 words) - 14:34, 4 October 2010
- [[WormBase Models]] == Model ==2 KB (208 words) - 14:36, 4 October 2010
- ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:4 KB (568 words) - 11:06, 23 May 2011
- [[WormBase Models]] == Model ==1 KB (122 words) - 13:28, 4 October 2010
- Lets add a blank tool to WormBase, I shall call you "lineage" In <code>wormbase.conf</code>1 KB (203 words) - 18:46, 19 June 2014
- [[WormBase Models]] == Model ==2 KB (305 words) - 08:49, 5 October 2010
- A Backbone.js + jQuery Mobile app for accessing the Wormbase database through its RESTful API. wormbase-mobile5 KB (769 words) - 15:16, 19 June 2014
- '''NOTE: This document is likely out of date. Consult WormBase::Model.pm for the most up-to-date documentation.''' ...generically in the reimplementation. This maximizes code reuse and makes model and template writing easier and faster.2 KB (271 words) - 14:09, 19 June 2014
- '''Configuration Czar''' -- ''View and application configuration'' -- '''Norie''' '''WormBase::API Czar''' -- ''Oversee development of the external Model'' -- '''Norie'''2 KB (261 words) - 00:48, 24 December 2010
- WormBase staff can find this document in the "Documentation" directory and edit it t = About Groups at WormBase =5 KB (757 words) - 01:45, 2 June 2014
- ...menu includes three kinds of search tools for advanced users to browse in WormBase for more specific results. ...lasses in the Class Browser about the data structure of WormBase, such as "Model".2 KB (273 words) - 18:24, 17 August 2010
- This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, ...e.org/wiki/index.php/Image:Fig_1_8_01.png). This will lead to http://blast.wormbase.org/db/searches/blat. This is the method of choice for searching the ''C. e3 KB (401 words) - 20:02, 11 August 2010
- -rw-rw-rw- wormbase.conf ...(henceforth "the web application") and a series of external models in the WormBase::API namespace.10 KB (1,357 words) - 14:03, 19 June 2014
- AMIGO2 (Wormbase Ontology Browser) ...ken AMIGO2 infrastructure to make an ontology browser for integration into WormBase5 KB (850 words) - 15:32, 5 September 2013
- https://spreadsheets.google.com/a/wormbase.org/spreadsheet/ccc?key=0Aj0AS0c7xC1VdGZSQnlvdTBlbUpPRWJVYlE4Tk9WRlE&hl=en_ * Model development support for flat file queries (Norie)2 KB (310 words) - 00:50, 14 July 2011
- ...e jbrowse track selection with a plugin, between a simple vs detailed/full view--needs a proxy update to work fully. ** temporarily deployed at http://dev.wormbase.org:9004/, Kimberly shared with GO group for feedback2 KB (280 words) - 14:45, 12 April 2016
- :http://wiki.wormbase.org/index.php/Website:Profiling * Model development support for flat file queries (Norie)2 KB (340 words) - 18:03, 20 July 2011
- ...reviously only with a text description are getting updated to fit the data model ...should be pushed from #Interactor_info into Interactor tag of ?Interaction model4 KB (633 words) - 19:09, 6 January 2015
- ...le/archive here] for an archive of outdated/obsolete information about the WormBase gene association file. To view the (now deprecated) GAF 2.0 format specification, visit:12 KB (1,718 words) - 17:45, 5 February 2021
- * ?Construct model === ?Construct model ===8 KB (1,218 words) - 17:46, 2 April 2014
- This page contains information pertinent to employees of WormBase. ...VPuB__KmNs5tErO6VXDY/pub New Employee Orientation] -- ''Getting started at WormBase, for employees at any location. Read this first.''12 KB (1,638 words) - 18:25, 18 June 2014
- === WormBase Ontology Browser (WOBr) for WS244 release === * Final data model may still need refinement?6 KB (801 words) - 17:29, 2 July 2014
- :http://wiki.wormbase.org/index.php/Website:Profiling '''* COMPLETE Model development support for flat file queries (Norie)'''3 KB (440 words) - 20:32, 27 July 2011
- *We should be able to start configuring for WormBase at that point *Gary will propose appropriate model changes (e.g. Add "silencer" and "enhancer" to method for GBrowse display)7 KB (1,059 words) - 15:37, 1 August 2013
- ** Should have a guide for users [http://www.wormbase.org/about/Frequently_asked_questions#f--10 Here] * User needs WormBase official response.3 KB (423 words) - 16:35, 7 September 2017
- === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model4 KB (622 words) - 16:47, 6 August 2014
- * Who from WormBase will go? * Working out how inferred annotations propagate from Noctua/LEGO model to GAF9 KB (1,377 words) - 16:44, 2 February 2017
- model? It seems pretty redundant with the Paper information and I'm not to WormBase?"4 KB (599 words) - 00:25, 4 May 2012
- ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]4 KB (613 words) - 09:23, 30 June 2011
- Curators checked their model proposals in this file: ...k/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]6 KB (909 words) - 21:56, 21 November 2013
- *?Human_disease model vs tag in ?Gene model? *Similar discussion to ?Process model discussion5 KB (847 words) - 17:49, 1 March 2012
- * We will need to learn to model in Datomic to start building curation tools that run off of Datomic ...has access to Colonnade & trAceView (table maker tool and web interface to view Datomic data like in ACEDB)4 KB (571 words) - 16:48, 3 March 2016
- * Testing at juancarlos.wormbase.org (from there go to Tools > Ontology Browser) ** Add a Reactome display to WormBase?10 KB (1,474 words) - 15:54, 30 April 2014
- EPIC data into WormBase *Need to modify model and display for data7 KB (1,070 words) - 17:47, 1 March 2012
- <pre>New release of WormBase WS154, Wormpep154 and Wormrna154 Fri Feb 10 12:46:08 GMT 2006 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE7 KB (749 words) - 11:08, 21 December 2011
- == 1. Model changes (Hinxton) == 1a) Variation model sign off7 KB (1,182 words) - 13:50, 20 April 2012
- New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes8 KB (885 words) - 16:47, 21 December 2011
- **Documenting elements of WormBase workflow to ease transition for new staff and keep track of changes made **Added information and links for getting started with WormBase29 KB (4,254 words) - 20:25, 27 April 2012
- ...eral discussion on DOI handling for micropublications and using the ?Paper model * Micropublications were displayed on ?Expr_pattern pages on WormBase/WormBook10 KB (1,475 words) - 16:57, 5 November 2015
- * We should remove underscores from "is_model_of" and translate to "is a model of" ...rmaster, working on developing the disease association file (DAF) from the WormBase build7 KB (1,073 words) - 16:26, 2 March 2017
- ...uild a robust and scalable platform for hosting the next generation of the WormBase website. [http://bitbucket.org/tharris/wormbase/issues/?component=Rearch:scalability Reported Issiues (bitbucket.org)]7 KB (1,258 words) - 18:49, 11 August 2010
- **Groups will switch to using common data model that works for all and common ontology/ontologies in the near future. ** Expression pattern curation needs genetic sex; needs a model at the Alliance for capturing sex5 KB (880 words) - 15:40, 3 September 2020
- **Performs similar to WormBase **Todd has made progress with getting Intermine for WormBase7 KB (1,158 words) - 17:20, 3 May 2012
- ***Integrated interaction model, genetic interaction ontology ***Need to update Gene expression model to accommodate Epic dataset (John Murray), 3D movies (Bill Mohler), and sin12 KB (1,878 words) - 15:55, 6 September 2012
- ...Karen, others are welcome. Visit the construct model requests [http://wiki.wormbase.org/index.php/WormBase_Model:Construct here] ...arned enough Catalyst to create a workable ontology browser on the caltech wormbase sandbox.10 KB (1,583 words) - 18:16, 5 February 2014
- ** model change to put topics in hierarchical structure. http://www.wormbase.org/tools/wormmine/template.do?name=Anatomy_LS_Genes&scope=all10 KB (1,485 words) - 18:08, 5 March 2014
- * Need to change "Tissue Enrichment Analysis" link title under WormBase Tools menu * There's a question about how we now handle model changes going forward7 KB (1,010 words) - 17:08, 4 May 2017
- === Model changes === ...leaf nodes with more granular information? Already available in unweighted view7 KB (1,062 words) - 14:41, 2 August 2018
- *WormBase - Bitbucket, GitHub (can commit code) *Is WormBase interested connecting to it?7 KB (1,117 words) - 16:39, 4 August 2011
