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  • ==AGR working group updates== ===UI Working Group===
    2 KB (270 words) - 16:48, 3 February 2017
  • This is the "Working Groups" page. Working Groups are intended to be groups of WormBase staff focused on particular is ...ed Working Groups. Please feel free to add a group or add your name to any group to which you would like to join:
    2 KB (306 words) - 15:01, 14 January 2016
  • == AGR Portal Use Case Working Group update == * Waiting to discuss orthologies with Orthology Working Group before adding orthology groups to search
    3 KB (421 words) - 16:39, 20 October 2016
  • == AGR working group updates/action items == == AGR working group updates ==
    2 KB (369 words) - 16:38, 6 October 2016
  • ==Phenotype working group==
    902 bytes (104 words) - 19:51, 20 November 2014
  • Raymond has been working on a prototype. People should try it and give feedback. ...ess than 3 weeks. The Disease working group is interfacing with UI working group to get a prototype up and running.
    1 KB (203 words) - 16:53, 16 February 2017
  • Will send the AGR SAB Staff Report to the group ...his sketch needs vision of the 5 year plan showing the cohesion of the AGR group members (common infrastructure and common curation efforts).
    4 KB (574 words) - 01:54, 2 March 2018
  • == Alliance scRNAseq Working group == *The Alliance will set up a new working group for scRNA seq data.
    2 KB (414 words) - 16:14, 18 May 2023
  • * Portal implementation working groups ** Curators / subject-matter-experts needed for each group (but not too many!)
    2 KB (351 words) - 18:32, 15 December 2016
  • ...tes from the independent sites and working groups (~two paragraphs/working group)
    814 bytes (129 words) - 16:35, 18 May 2017
  • * Daniela and Karen working on * Working with Transgenome project and GSA
    4 KB (544 words) - 16:22, 5 January 2017
  • == Alliance working group project plans == * Group has generated alignments between human and worm proteins (using UniProt pro
    3 KB (400 words) - 16:03, 15 March 2018
  • * PR System working ** outstanding issue - group pattern, resulting image doesn't work
    903 bytes (127 words) - 14:33, 29 July 2014
  • === Updates from AGR working groups === ...the next build (WS256) on hold? Probably not. OICR won't need to start the working on WS256 for ~4 weeks
    3 KB (501 words) - 17:29, 1 September 2016
  • ...pparently not been working for some time; script for downloading WS is not working *The Complex Portal (EBI) group makes GO annotations to C. elegans protein-containing complexes
    1,006 bytes (150 words) - 16:06, 13 January 2022
  • * Will there be (near)whole group attendance at the International Worm Meeting? * Any updates on portal 0.3 and working groups
    3 KB (541 words) - 15:58, 20 January 2017
  • === Update from AGR portal use case working group === * Working group would like to know:
    5 KB (831 words) - 16:49, 1 December 2016
  • --ticket #588 David Baillie from Vancouver group would like wormbase to fix the BC strains (gfp expression strains) display, * Hinxton & WashU working on Brugia (curation of gene models, RNASeq transcripts, introns, SL1s, expr
    1 KB (182 words) - 10:02, 2 November 2012
  • ==Working Group==
    3 KB (325 words) - 17:36, 25 April 2023
  • * Expression working group working with Brian Oliver to have GEO take in more structured meta data === Alliance Literature Group ===
    4 KB (605 words) - 15:21, 3 March 2020
  • * [[Working Group:Handling Multiple Species:Meetings-2010.11.09| 2010.11.09]]
    885 bytes (118 words) - 16:42, 9 November 2010
  • ...list options here available wherever lists are provided in WormBase (Sibyl working on it) * The Alliance interactions working group is considering proposing a greater alignment between GO interaction annotat
    4 KB (694 words) - 21:33, 19 December 2019
  • * Fate of current and future working groups * Expression working group
    4 KB (575 words) - 18:18, 6 December 2018
  • * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal phenotype term organization === AGR Disease working group ===
    7 KB (1,073 words) - 16:26, 2 March 2017
  • ...enome location information for variants at point of curation. The Alliance working on generalising that. ...be a more appopriate task for a curation tool group, rather than variants group.
    3 KB (441 words) - 17:15, 1 August 2019
  • * Working on modularization, which features to export * New data from Waterston group
    1 KB (176 words) - 10:55, 22 July 2009
  • * Ranjana working with Juancarlos to run and update automated descriptions pipeline === AGR Portal Use Case working group update ===
    8 KB (1,289 words) - 18:11, 10 November 2016
  • ...orarily deployed at http://dev.wormbase.org:9004/, Kimberly shared with GO group for feedback ** TODO this week: email GO group about whether their API could support some extra feature.
    2 KB (280 words) - 14:45, 12 April 2016
  • * Raymond and Juancarlos have been working on === Alliance Literature Acquisition working group ===
    5 KB (701 words) - 15:38, 4 June 2020
  • *Literature group is working on PDF acquisition, storage, and access for the Alliance ABC
    1 KB (153 words) - 15:50, 20 October 2022
  • * Analysis working group: data freeze on September 10th.
    1 KB (200 words) - 09:42, 26 August 2009
  • * Kimberly working on different C. elegans models * Working on several pathways simultaneously
    9 KB (1,377 words) - 16:44, 2 February 2017
  • ...changes to the web display that we spoke about at our Interaction Working group meeting include:
    1 KB (219 words) - 22:52, 12 January 2011
  • = FlyBase has a group of 200-300 testers for their new features. = #Is community curation working?
    1 KB (216 words) - 11:16, 19 January 2018
  • === Working group discussions === * Bob Goldstein's group prepared software tools in their paper; could we make use of them?
    9 KB (1,490 words) - 15:35, 6 October 2016
  • === AGR disease working group update === ...at a later release, probably as a work product of the AGR Variants working group
    11 KB (1,664 words) - 16:29, 7 December 2017
  • ** Suggestion (Kimberly): form an internal WB working group to plan the transition from WB to Alliance. Paper approval and acquisition
    1 KB (229 words) - 16:05, 15 July 2021
  • * The AFP group will work with Ranjana to incorporate it. Ranjana will prepare a mock by ne ** Working with two plant journals
    9 KB (1,366 words) - 15:19, 6 September 2018
  • ** Automated gene descriptions - Ranjana, gene description working group * Micropublication group will apply for a workshop
    5 KB (698 words) - 16:11, 3 January 2019
  • # Zoom channel for Alliance Working Group calls
    1 KB (211 words) - 17:49, 15 April 2021
  • ...own definition of "allele" (and other terms) at AGR (with Variants working group) * Kevin working on import file (will use WS263 to be in sync with AGR 1.3 release in March/
    2 KB (327 words) - 16:50, 4 January 2018
  • The group is getting the next release ready and it will include variations from diffe ...hologs: Discussions are very much in flux and there is no official working group, but there needs to be discussions of standard formats for data. Major qu
    3 KB (457 words) - 19:24, 7 July 2016
  • * Interaction Working Group is talking about getting WormBase data into AGR
    2 KB (213 words) - 18:30, 1 February 2018
  • ** Kevin & Michael are working on GBrowse config - communicate with them * WormMine tutorial - after Full Group call
    2 KB (252 words) - 15:53, 10 May 2013
  • *Working to address issues raised at those meetings **Working to confirm errors using RNA-Seq data and ESTs
    4 KB (617 words) - 17:01, 19 July 2012
  • *Working on data model for RO led to a discussion at Caltech about how much associat == Alliance Working Group on Literature Curation Pipelines ==
    11 KB (1,898 words) - 16:43, 7 June 2018
  • * Have document of things to discuss as a group. ** Need to have a working procedure.
    3 KB (561 words) - 18:39, 6 February 2020
  • ...ort:_August_2020#Subscribing_to_the_LabHeads_Mailing_List|Lab Heads Google Group Mailing list]] to receive these messages by email (instructions at the end subcommittee is working and will report to the community by the end of the year.
    4 KB (641 words) - 17:26, 10 November 2020
  • * Chris will report back to group afterwards; hope to organize a process for acquiring "Core" certification f ...WormBase/website/issues/6869 Interaction external link outs to BioGRID not working on interaction pages]
    2 KB (263 words) - 15:49, 4 April 2019
  • *We will NOT run through our talks, but can discuss slides with others in working groups. *Working Groups – ideas for groups include:
    5 KB (763 words) - 00:51, 19 September 2014

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