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- | Molecule||Karen | Transgene||Karen1 KB (200 words) - 17:59, 6 October 2017
- *Karen will collate and print the data type and tools documents for the SAB, deadl *Karen will send e-mail to Sibyl, and Sibyl will print at site of meeting909 bytes (139 words) - 16:20, 5 July 2018
- https://github.com/WormBase/website/issues/5579 reference issue (Karen) * https://github.com/WormBase/website/issues/5579 reference issue (Karen and Sibyl to deal with)2 KB (263 words) - 22:55, 16 May 2017
- * Kevin made discussed creating a few slides; Karen volunteered to create them.342 bytes (44 words) - 15:50, 16 August 2018
- == RRID - Karen and Mary Ann== * Karen does not support their use except maybe for objects which do not have uniqu3 KB (423 words) - 16:35, 7 September 2017
- *Karen Yook944 bytes (115 words) - 14:04, 19 July 2012
- These requirements originate from: [[User:Kyook|Karen Yook]], a CalTech-based WormBase curator. In WS217 Karen's proposed WormBase model for a new Class named 'Molecule' was added to the1 KB (209 words) - 19:57, 25 July 2012
- * Question re: Karen's data; we're waiting for the details1 KB (205 words) - 16:41, 14 October 2009
- == TAGC reports (Karen, Daniella, Todd) == Daniela and Karen are on vacation, reports from us will have to wait until next week.2 KB (353 words) - 17:03, 21 July 2016
- *Karen Yook335 bytes (26 words) - 17:18, 22 February 2011
- |gene cluster||phylogenetic profile clusters||N/A||Karen||none||# gene cluster objects|| ...al interactions||int_ ||Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook||find |Interaction<br>Interaction with Physical<br>Interaction with Ge4 KB (580 words) - 18:13, 6 October 2017
- * Karen set up call with Doug Howe from ZFIN * Karen covered basic overview of WB pages1 KB (234 words) - 16:02, 5 May 2016
- * [Karen] How do I deal with non-elegans gene names that are used in genetics and mi On call: Andres, Dio, Jae, Juancarlos, Karen, Kimberly, Mark, Michael, Paolo, Ranjana, Raymond, Scott, Stavros, Steph, T2 KB (283 words) - 15:52, 3 August 2023
- * micropublications will have a breakfast slot (Daniela / Karen) * will also do a micropublication slot in the WormBase workshop (Daniela / Karen)2 KB (280 words) - 17:48, 1 April 2019
- ===Transgene - Karen===3 KB (475 words) - 14:53, 19 February 2013
- * Molecule model (Karen) * Pathogen tag in #Phenotype_info (Karen & Chris)2 KB (250 words) - 18:47, 5 November 2015
- /home/acedb/karen/WS_upload_scripts/phenotype/use_package.pl*<br> /home/acedb/karen/WS_upload_scripts/paper_object/get_paper_object.pl*5 KB (749 words) - 19:47, 17 May 2018
- ===karen=== I agree with Karen's evaluation of some of the links listed above. Links that are made to tex3 KB (511 words) - 21:07, 1 August 2011
- === Karen's talk at ZFIN === *Doug, Karen, and possible SGD person will spend 10-15 minutes introducing the respectiv4 KB (604 words) - 15:28, 5 May 2016
- * Additional Func: Gene_cluster - Karen Y.704 bytes (104 words) - 12:27, 28 January 2014
- ...allele'''||extvariation||afp, cfp, tfp, jfp||variation NS||old: home/acedb/karen/cur_status_sources/vargene_ref.txt; current:?||for paper-allele connections ...y genetic or other treatment'''|| genereg ||afp, cfp||postgres||home/acedb/karen/cur_status_sources/regulation_ref.txt||6 KB (841 words) - 08:24, 24 October 2014
- * Karen: would be good to still point out a "public name" or "common name" * Karen: Could implement something like Apollo? Talk to Nathan?3 KB (427 words) - 15:32, 1 August 2019
- == IWM (Karen)== == IWM plans (Karen) ==4 KB (624 words) - 17:15, 4 April 2013
- ==== Legacy data incorporation (Variation Phenotype_info) - Karen ==== ==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====5 KB (800 words) - 10:09, 17 February 2012
- Aldrin Montana here next week (Karen) *Talk to Karen if you want to talk to him5 KB (752 words) - 17:07, 7 July 2011
- Karen Yook Karen Yook, PhD5 KB (693 words) - 18:45, 2 February 2017
- Kevin queried the e-mail thread where Karen raised objection to the RRID scheme. Karen explained the rationale for objections; group discussed at length.2 KB (350 words) - 11:50, 6 January 2017
- Overview and status -- Karen '''1435 - 1445''' Process pages -- Karen <br>3 KB (357 words) - 20:30, 6 June 2014
- [PD] Models freeze is tomorrow; working on small molecule model for Karen.995 bytes (143 words) - 16:59, 21 February 2019
- ==== Legacy data incorporation (Variation Phenotype_info) - Karen ==== ==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====8 KB (879 words) - 09:32, 3 February 2012
- Karen, Paul Davis, Mary Ann Karen, Lincoln, Raymond4 KB (689 words) - 11:13, 29 August 2013
- Curator: Karen Y. Curator: Karen Y.?2 KB (358 words) - 14:03, 13 January 2014
- ===karen=== Same comments as Karen and Chris3 KB (442 words) - 21:09, 1 August 2011
- From Daniela and Karen: ...onnectivity). To begin Hinxton needs a GFF and IDs. They will check with Karen to see if the data she already has is enough to do this and if not speak wi3 KB (457 words) - 19:24, 7 July 2016
- ===karen=== In bold the things that differ from Karen's comments. it took me 1.5 hour to go through the paper.6 KB (970 words) - 19:52, 2 August 2011
- ...ce tools to submission forms so that authors can generate figures on site. Karen will discuss with Hinxton team about this offline1 KB (165 words) - 18:42, 15 August 2019
- === Dumping data for upload, taking over for Karen === * Karen will take care of dumping and uploading the data for this upload7 KB (1,010 words) - 17:08, 4 May 2017
- // WBProcess class Model - Proposed by Karen Yook WS2252 KB (207 words) - 14:11, 4 March 2011
- ** Magda, Paul D., Karen will meet with Tim to come up with some solutions of gene naming informatio942 bytes (149 words) - 16:13, 5 May 2022
- Karen -1 KB (181 words) - 15:47, 2 November 2017
- :*[[Mac OSX(Leopard)|Mac OSX(Leopard)]] (See Karen)1 KB (190 words) - 20:54, 24 September 2010
- ...orking on it- ky'' xEs12400 Vancouver large-scale strains and trangenes - Karen, Wen ...rowse- needs help from GBrowse Dev, WebTeam or Hinxton?-ky'' Died links - Karen6 KB (1,069 words) - 20:52, 23 July 2013
- ::Karen Yook ::Karen Yook2 KB (306 words) - 15:01, 14 January 2016
- ** Karen: literature curation WG would be interested in having a central name server *** Karen: Yes, doing this for micropublication3 KB (529 words) - 18:26, 16 July 2020
- ...ds like phenotype, paper, object name, phenotype remark (already raised by Karen)--[[User:Jolene|Jolene]] 12:04, 4 April 2008 (EDT) ...e allele or linked gene that differs from current knowledge.--[[User:Karen|Karen]]6 KB (1,053 words) - 20:38, 24 September 2010
- Community Annotation poster (Mary Ann, Karen, Ranjana, Daniela) and presence at booth good Karen - good for tracking emails, threads, can integrate other tools like github3 KB (477 words) - 16:23, 19 March 2015
- * Sent Karen the appropriate code for their collaboration1 KB (205 words) - 16:53, 7 October 2009
- **construct (Karen - responded) **Karen and Paul D. answered - Karen is looking into the construct data7 KB (1,077 words) - 16:26, 20 July 2017
- ====Lanyards (Karen will do)==== * we recently discussed (Karen, Tim, Daniela) if an engineered allele (or an antibody) could be micropubli8 KB (1,231 words) - 22:06, 25 July 2017
- *On call: Adam, Cecilia, Chris, Daniela, Juancarlos, Karen, Kimberly, Paulo, Raymond, Scott, Sibyl, Todd, Valerio, Wen, Kevin, Paul D, **Chris, Daniela, Karen, Ranjana5 KB (816 words) - 16:43, 17 May 2018
- * Karen needs to do some changes for the transgene model.1 KB (201 words) - 19:18, 24 January 2013
- excused: Karen1 KB (213 words) - 16:56, 15 February 2018
- Apologies: Karen (I need to leave 30 minutes into the meeting)1 KB (229 words) - 16:05, 15 July 2021
- **Todd and Karen will take care of this; decision was to contact libraries that take history1 KB (217 words) - 20:07, 17 November 2022
- **Karen made a Google doc, but asked us to hold off on filling out info until she t ...er.com/ Time Glider] app: [http://timeglider.com/timeline/cacc0f6f4491a510 Karen's proposal]4 KB (651 words) - 16:11, 2 May 2013
- === Karen's SBIR grant === * Karen will need to become part time at WormBase (needs to be more than half time10 KB (1,527 words) - 15:32, 6 April 2017
- ** Paul, Wen, Chris, Karen, Daniela, Kimberly, and Scott will go1 KB (229 words) - 16:31, 2 November 2023
- ...working on WBProcess. Mark has seconded back to modencode for 6 months so Karen should now work with Todd or Abby.4 KB (597 words) - 18:34, 31 October 2012
- * On call: Adam, Chris, Daniela, Faye, Jae, Juancarlos, Karen, Kimberly, Magz, Mark, Paulo, Ranjana, Raymond, Scott, Stavros, Todd, Valer2 KB (239 words) - 17:32, 3 December 2020
- - Karen agreed to take the lead on NAR and/or Worm. Everyone agreed (Caltech's turn1 KB (213 words) - 16:30, 21 July 2011
- | Karen ||2/16-3/1|| 7/6-7/192 KB (241 words) - 23:04, 13 August 2010
- added by Karen ...erge information to Transgene Summary or Remark will get the info into WS. Karen will decide if a schema change is necessary.3 KB (534 words) - 17:29, 1 October 2020
- excused: Todd, Karen, Paolo2 KB (213 words) - 18:30, 1 February 2018
- *No objections at Caltech; Karen will send to Paul Davis *Changes to ACE dumping script; Karen will talk to Juancarlos7 KB (1,103 words) - 18:28, 5 May 2011
- // WBProcess class Model - Proposed by Karen Yook WS2253 KB (275 words) - 01:07, 6 February 2014
- *Karen puts in alleles in the name server with paperID, these will be prioritized *Karen enters allele data from papers that come through the GSA markup pipeline be4 KB (613 words) - 17:56, 16 January 2020
- *People from Caltech attending: Karen, Daniela, Michael Müller (Textpresso), Kimberly (going to GO meeting)2 KB (256 words) - 17:36, 4 April 2013
- * Karen: FlyBase chapter has small sections rather than long articles about their p * Karen has made pharyngeal pumping phenotype terms for NemaMetrix micropublication7 KB (1,073 words) - 16:26, 2 March 2017
- * Additional Func: Gene_cluster - Karen Y. Could Karen check her model in the final file....should be ok.4 KB (617 words) - 17:14, 23 January 2014
- ?Transgene - Karen.2 KB (294 words) - 16:14, 16 August 2012
- * Karen & Ranjana raised the [https://github.com/WormBase/website/issues/7985 issue1 KB (205 words) - 17:27, 19 November 2020
- *Question for Karen: What afp tables are populated from the Genetics/G3 pipeline? === Karen and Daniela going to Bay Area meeting ===6 KB (921 words) - 16:52, 4 January 2018
- **Organizers**: King Chow, Ho Yi Mak, Karen Yuen<br> |Karen12 KB (1,663 words) - 16:28, 9 October 2023
- (Karen, Kimberly)<br> 1) The long awaited ?Construct class - Karen15 KB (2,374 words) - 16:00, 17 July 2014
- * From Karen2 KB (227 words) - 15:59, 5 September 2013
- * Karen asked about getting WB IDs for rearrangements (they currently do not get se * Karen, Paul, et al. will setup a call5 KB (857 words) - 14:36, 9 March 2020
- ...ong), Gene interation and overexpression of gene interaction (Chris, Gary, Karen). 0 4 * * * /home/acedb/karen/cronjobs/assign_transgene_IDs.pl9 KB (1,321 words) - 21:59, 3 May 2020
- ...Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook5 KB (352 words) - 17:20, 25 September 2015
- Karen: I don't see any downsides unless companies want to charge us for this serv2 KB (303 words) - 15:59, 4 November 2021
- * Karen handing over to Wen Karen: Where does worm parasite-human disease data go? <br>4 KB (709 words) - 13:27, 5 April 2021
- *** Start sending Transgene report (to Karen)2 KB (279 words) - 17:17, 3 March 2022
- * Karen says it's about little details of research along the lines of Worm Breeder' * Karen is already talking with zfin people about curation comparisons, we will see5 KB (732 words) - 14:46, 29 April 2016
- | Karen. issue is not resolved. This issue needs input from the team - specificall | mary-ann, karen, paul D. will handle this5 KB (719 words) - 16:40, 19 September 2013
- The help desk queue includes Raymond Lee, Scott Cain, Karen Yook, Wen Chen, Mark Quinton-Tulloch, Juancarlos Chan, Cecilia Nakamura, St |Karen Yook42 KB (5,353 words) - 14:28, 7 May 2024
- * ?Gene_cluster - Karen would like to use this underused class for phylogenetic gene clusters * ?Construct Class - Paul D has not spent much time on this. Karen agreed it is not required for WS241.8 KB (1,246 words) - 15:52, 12 November 2013
- ...|/home/postgres/work/citace_upload/cns_construct/use_package.pl<br>|| || ||Karen Yook, Daniela Raciti, Xiaodong Wang|| ...s| model]]||Concise description of gene classes|| || ||Gene <br> Paper|| ||Karen Yook||20 KB (3,050 words) - 21:01, 19 April 2017
- ...y Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Karen Yook, Richard Durbin, Lincoln D. Stein, John Spieth and Paul W. Sternberg ( ...Ann Tuli1, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Karen Yook, Richard Durbin, Lincoln D. Stein, John Spieth and Paul W. Sternberg (6 KB (781 words) - 02:18, 1 April 2012
- *Karen using author first pass list for priority *Karen sent out first draft4 KB (650 words) - 17:08, 1 September 2011
- Contact persons: Karen Yook2 KB (307 words) - 14:04, 7 February 2013
- * Karen: attending impromptu OICR group meeting, won't be on the Caltech call. * EcoCyc, MetaCyc - pathway curation (will hear from Karen)10 KB (1,474 words) - 15:54, 30 April 2014
- ...or want to upload a file instead, contact Karen Yook, Wormbase Curator, at karen@wormbase.org. '''Caltech''' Karen Yook, Hans-Michael Müller, Paul Sternberg. ''Alum'': Arun Rangarajan, Chri17 KB (2,790 words) - 20:50, 10 January 2017
- Caltech: Wen Chen, Xiaodong Wong, Karen Yook, Mary Ann Tuli2 KB (283 words) - 19:20, 11 April 2014
- Request for phenotype_info tag name changes - Karen WBProcess class - Karen/Thomas9 KB (1,431 words) - 23:32, 23 June 2015
- ** Karen & Chris requested legend changes2 KB (273 words) - 14:57, 10 September 2013
- * Karen and Chris will work with Juancarlos on how to handle dead genes in ?Constru * Karen and Mary Ann are curating large numbers of lethal (Let) variations being se4 KB (633 words) - 19:09, 6 January 2015
- * Karen will send around info on Monarch phenopackets * Daniela and Karen have been working on booklet8 KB (1,213 words) - 15:29, 6 July 2017
- * Chris will send corrected models.wrm file to Karen * Karen will send models.wrm to Paul Davis by tomorrow4 KB (622 words) - 16:47, 6 August 2014
- * Karen: Perhaps a question to ask is "what are the main questions they are trying * Curators that use a Textpresso pipeline: Karen, Ranjana, Xiaodong, (Daniela?), Mary Ann6 KB (974 words) - 17:28, 3 September 2014
- Adam, Karen, Kevin, Kimberly, Matt R2 KB (323 words) - 18:24, 15 November 2018
- *WormBase(Pasadena): Karen Yook, Daniela Raciti, Chris Grove, Ranjana Kishore (Dallas), Kimberly Van A2 KB (361 words) - 23:31, 11 January 2011
- * Karen raised the possibility of manual curation being required. This would requir2 KB (324 words) - 17:41, 2 June 2016
- * Karen : Acknowledge people who curated with prizes or callout ? * Karen : worm oscar trophies, a worm holding a worm.7 KB (1,113 words) - 18:19, 6 April 2023
- Karen introduced Nick Stiffler.2 KB (347 words) - 17:44, 7 November 2019
- * Daniela, Chris, Karen are the only Caltech curators who use it. * Juancarlos has emailed Sibyl + Matt + Caltech with what we know so far. Karen and Chris, please reply if you have other name service uses beyond what Dan5 KB (759 words) - 15:02, 11 September 2019
- * Karen proposed having functionality in the OA to dump specific data from the OA i * Karen will look into what this would involve; if it's worthwhile5 KB (715 words) - 15:49, 4 August 2016
- * Ranjana, Karen, and Chris will work out a pipeline to link elegans gene variations and phe * Karen talking with Michael Witting8 KB (1,305 words) - 23:24, 3 June 2015
- *Daniela and Karen invite PomBase to start harmonizing a person model, will send all Alliance2 KB (325 words) - 15:24, 7 October 2021
- ** Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, Ranjana Kishore, Juancarlos Chan, Marie-Cla * Karen Yook -- ''making more use of microPublication''5 KB (696 words) - 13:32, 13 July 2018
- *Karen, Raymond, Chris will talk to Todd *Karen has encountered some issues; needs to reproduce9 KB (1,302 words) - 16:38, 2 June 2011
- * Karen created Lipid metabolism pathway ...wbank are updating their WormBook chapter on innate immunity; working with Karen on WikiPathway8 KB (1,147 words) - 15:33, 7 May 2015
- ...Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat2 KB (379 words) - 17:22, 7 January 2021
- * Karen and Daniela in touch with e-publishing platforms (HighWire [http://home.hig * Karen and Daniela spoke to person at HighWire5 KB (831 words) - 16:49, 1 December 2016
- * [[https://github.com/WormBase/website/issues/2015 2015]] External URL, karen and Abi are working on this * [[https://github.com/WormBase/website/issues/2016 2016]] External URL, karen is working on this - '''NOT HELPDESK'''6 KB (909 words) - 21:56, 21 November 2013
- *Karen and Juancarlos will discuss for variations today *Wen and Karen working on how to house the data8 KB (1,225 words) - 16:33, 3 October 2013
- *Daniela, Juancarlos, and Karen imported Extrachromosomal array transgenes into the Transgene OA *Daniela and Karen will discuss cost-benefit of objectifying Ex transgenes7 KB (1,070 words) - 17:47, 1 March 2012
- | [[User=kyook|Karen Yook]] | [[User:Kyook|Karen Yook]] (phenotype)16 KB (2,207 words) - 23:06, 9 January 2014
- * 20151013 /home/acedb/karen/mid_release_scripts/nbp_maryann/parse_maryann.pl has been updated to remove *Move and rename file onto tazendra to /home/acedb/karen/mid_release_scripts/nbp_maryann/NBP_latest6 KB (920 words) - 00:20, 14 October 2015
- ...entation of GSoC project (Valerio, Magz, Paul, Stavros, Kimberly, Daniela, Karen)2 KB (354 words) - 16:05, 16 September 2021
- Karen is uploading for CalTech2 KB (339 words) - 16:20, 20 April 2017
- * New object data from the journal first-pass form is sent to Karen, who makes sure the information is entered correctly3 KB (471 words) - 19:53, 19 April 2012
- *The proposed solution will work: Sibyl, Daniela Karen will work on implementing it3 KB (421 words) - 16:39, 20 October 2016
- *Karen writing summaries for processes *Look at Processes in the Process OA by querying for "Karen" as a curator5 KB (843 words) - 17:26, 1 November 2012
- [Karen] The strains are real so they should be captured. However the authors need3 KB (458 words) - 16:53, 1 February 2024
- ***Transgene - Karen2 KB (383 words) - 11:59, 15 February 2013
- ...al is to put WBPerson IDs in column 6 for personal communications. Chris & Karen will check if this will work. * Karen spoke to CHEBI personnel on Tuesday6 KB (861 words) - 19:23, 5 November 2020
- * Process and pathway curation and display (Karen; 10 minutes) **journal article processing (GSA markup) Arun, Karen (15 min)5 KB (644 words) - 22:02, 23 January 2013
- *Karen and JD working on *Karen explained what should be displayed, where and how on the page9 KB (1,339 words) - 19:02, 31 January 2013
- Next Help Desk Officer -Karen, July 10th-24th.3 KB (454 words) - 18:36, 10 July 2023
- **Caltech: Chris, Gary, Juancarlos, Karen, Kimberly, Mary Ann, Paul, Ranjana, Raymond, Wen, Cecilia3 KB (435 words) - 19:56, 4 March 2016
- ...ting with Mary Ann and or Alex. Either add yourself to the Calendar or let Karen know when you have time to chat. * Chris, Karen, et al meet with Alex10 KB (1,485 words) - 18:08, 5 March 2014
- -Karen is talking to other groups about allele curation (ZFIN, RGD).3 KB (441 words) - 17:15, 1 August 2019
- ...ariation/transgene class - Main people being Mary Ann, Daniela, Chris, and Karen, others are welcome. Visit the construct model requests [http://wiki.wormba *Karen will move ahead with the ?Construct model just for the context of genome-ed10 KB (1,583 words) - 18:16, 5 February 2014
- *** Should this be an agenda item for this meeting? @karen **21:30 – 23:00 (9:30-11:00) Odd "A" Posters (Mary Ann and Karen) - Pauley Pavilion8 KB (1,291 words) - 21:09, 23 June 2013
- ...Molecule XREF Gene_regulator #Boolean // ?Molecule model - Karen Yook5 KB (514 words) - 21:15, 7 December 2010
- Based on input from Tim Schedl and Karen Yook, the script does not link only the gene portion of any transgene. For ...eneral and should be automated is incorporated into the linking script. If Karen finds any new objects in the article that were not declared by the authors,14 KB (2,324 words) - 19:51, 9 January 2015
- *Daniela [Karen/Raymond filling in as conference moderator]3 KB (420 words) - 16:02, 17 August 2017
- * The AFP pipeline is currently emailing authors from karen's e-mail address * Gary S., Karen, Kimberly, and Chris have responded to [https://doodle.com/poll/xzkxet8sb579 KB (1,366 words) - 15:19, 6 September 2018
- *Juancarlos and Karen were discussing creation of a form to allow curators to update/edit drop do3 KB (436 words) - 17:59, 11 July 2013
- * Should Doug and Karen decide topic? * Paul S. will discuss with Karen and Doug about topics8 KB (1,224 words) - 15:34, 21 July 2016
- *** Karen: No, we should insist authors use the proper names * DOI should work right away; Karen will look into if there's a problem/typo9 KB (1,368 words) - 15:27, 4 October 2018
- *Karen needs a curator to view a micropub with large quantities of gene regulation3 KB (503 words) - 21:00, 6 January 2023
- // Molecule class Model - Proposed by Karen Yook WS2176 KB (543 words) - 23:29, 15 March 2016
- *Responsible data curator: Kimberly (pre-postgres paper entry); Karen (post-postgres paper entry) *Responsible data curator: Kimberly, Karen17 KB (2,401 words) - 22:36, 29 November 2017
- * Maybe Karen/Daniela could do a webinar during the Nov 14 slot * Daniela and Karen might be able to join Bay Area worm meeting11 KB (1,664 words) - 16:29, 7 December 2017
- *Additional error check for Karen - duplicate interactions on multiple rows *Ranjana, Raymond, Paul, Hillel, and Karen will speak to her6 KB (983 words) - 18:02, 12 July 2012
- Karen just started helpdesk, nothing outstanding - things dealt with by Faye3 KB (494 words) - 16:08, 4 June 2020
- *Solution from Karen and Chris: If the Hinxton name server already has the variation but it isn'3 KB (542 words) - 16:49, 1 July 2021
- * SOP? Karen wrote Wiki pages for molecule curation; she will look them over and can rev * Karen looking into it10 KB (1,586 words) - 15:30, 2 November 2017
- *Karen and Chris joined a Teaching Curation workshop to teach undergraduates about3 KB (525 words) - 17:20, 4 April 2024
- * Karen e-mailed around older proposal for work with Santiago Lombeyda * Karen wants to adapt Ranjana and James' automated gene descriptions for alleles6 KB (926 words) - 16:49, 3 December 2015
- ** 15.00 Process / Topic curation - Karen Yook3 KB (438 words) - 07:19, 6 October 2014
- * Name server. Manuel working on this, Daniela and Karen will reach out to him and let him know that down the road micropublication * Karen asking about some erroneous IDs used in the name server. Stavros says that9 KB (1,375 words) - 16:04, 18 April 2024
- Micropublication - Karen & Daniela3 KB (552 words) - 17:23, 3 January 2019
- * Karen: Nemametrix has been asking about how to donate to WB; we could certainly b3 KB (493 words) - 16:08, 16 March 2017
- 2) Karen wants to discuss Variation data with Mary Ann * Action Item: Mary Ann, Karen Y. set up call or something off line.7 KB (1,182 words) - 13:50, 20 April 2012
- .../forms/generic.cgi to have updateVariationObo populate based on this data. Karen, verify that this looks okay in the OA, ''it looks fine -k'', then we'll ne ...l to make the obo tables for taxon data '''DONE''', Karen runs /home/acedb/karen/processOA/update_obo_taxon.pl to populate data based on species_taxon.txt,20 KB (3,088 words) - 19:17, 13 August 2020
- *Karen working on it *Karen will send around7 KB (1,064 words) - 19:12, 3 November 2011
- ...cope for different things (please correct me if that's not what you said) Karen mentioned we have other sources for minting DOIs if Mike Cherry's 50k/year3 KB (511 words) - 18:54, 18 February 2021
- *Karen and Juancarlos will construct a ?Database class OA *Karen generated Wiki page: http://wiki.wormbase.org/index.php/OA_forms,_tables,_s13 KB (1,983 words) - 16:40, 7 November 2013
- Karen: Transgene model ...t the consensus was that this was a good idea. Going forward - Initially Karen will go through all the CGC strains that have transgene info and add it to13 KB (2,097 words) - 22:48, 7 April 2011
- * Karen working with this3 KB (561 words) - 18:39, 6 February 2020
- *WikiPathway for male mating (Karen made); Marc made mock page and put it up *Karen already doing this to some extent for processes7 KB (1,074 words) - 17:19, 4 October 2012
- **Karen's (InSilico) grant goals are to ...geneace dump. Could possibly just dump all Postgres data into one place, Karen's developers could write scripts to process that data;12 KB (1,809 words) - 16:33, 1 March 2018
- * starting to work with Chris and Karen on developing cross-products, still in exploration phase *Gene Function and Interaction google docs (Chris, Gary S., Karen, Kimberly)10 KB (1,453 words) - 18:52, 4 February 2015
- * Karen trying to make the curation of constructs & transgenes easier ** Karen would take care of the details10 KB (1,464 words) - 17:09, 13 August 2015
- ** Karen: tools are still being developed; the platform is not being advertised as m * Karen: Micropublications team will reach out to curators to help build submission8 KB (1,121 words) - 14:01, 15 July 2019
- ...g 'where e>1' for example). <br>''where is the file ?'' I'm putting it in /karen/Gene_class unless you want me to put it somewhere else. ''that's good.'' ''4 KB (704 words) - 18:19, 28 June 2011
- * Daniela and Karen working on4 KB (544 words) - 16:22, 5 January 2017
- * Karen working with Michael Witting to pull in metabolomics data * Chris will give Karen a heads up next time the issue is intended to be discussed within the Allia9 KB (1,364 words) - 15:39, 7 February 2019
- * Pathways [Karen, 20]4 KB (462 words) - 08:54, 8 October 2014
- * Automated paper flagging and data identification (Karen)4 KB (640 words) - 19:07, 11 February 2016
- Karen has to report for jury duty and will miss the conference call.5 KB (796 words) - 21:05, 10 March 2014
- ...for readout into Phenote. The files are stored on tazendra in /home/acedb/karen/populate_gin_variation.5 KB (782 words) - 20:35, 24 September 2010
- <br>I'll take care of it. -Karen4 KB (610 words) - 13:12, 14 November 2014
- * Allele phenotype filter (Karen) * Show Gene and Allele names (Karen)10 KB (1,475 words) - 16:57, 5 November 2015
- * Karen requested option to curate constructs with human genes4 KB (695 words) - 14:44, 3 December 2020
- ** Pathways and Processes (Karen)5 KB (670 words) - 16:00, 5 August 2021
- ...iage working group: It will be good if MODs can share their paper sources. Karen, Michael Mueller, and Kimberly will be involved in this WG.4 KB (694 words) - 21:33, 19 December 2019
- *** Reagents -> Antibody -> Daniela; Molecules, transgenes, constructs -> Karen5 KB (787 words) - 18:10, 25 August 2022
- Caltech - Karen, Kimberly, Paul, Ruihua5 KB (746 words) - 18:57, 10 August 2010
- Karen would like to use this underused class for phylogenetic gene clusters7 KB (881 words) - 15:46, 21 November 2013
- *Phenotype -Karen *Process -Karen14 KB (2,213 words) - 19:26, 12 February 2019
- ** Karen will help with Construct, Transgene, Topic, Molecule OAs5 KB (670 words) - 15:31, 3 June 2021
- * Karen working with AddGene to pull in worm reagents (plasmids/constructs)5 KB (689 words) - 15:35, 7 April 2016
- ...t upon internal discussion it seemed that this might be better placed with Karen at Caltech.8 KB (1,073 words) - 15:31, 14 December 2012
- * Micropublications will have a booth (Karen and Daniela will attend)5 KB (747 words) - 16:31, 5 December 2019
- ** Still uses old Textpresso-Dev; no longer needed? Probably not; Karen can look if there's anything there worth keeping (nothing critical)5 KB (873 words) - 14:41, 4 February 2021
- *Gary and Karen talking about fixing/cleaning up Phenotype Ontology5 KB (847 words) - 17:49, 1 March 2012
- ..._name mapping in both files by both public_name and WBVar, emails curator (Karen) if it's different. The curator needs to edit the obo_tempfile to resolve t8 KB (1,375 words) - 05:12, 21 April 2020
- *Timeline [http://timeglider.com/timeline/cacc0f6f4491a510 proposal] by Karen6 KB (864 words) - 15:32, 6 June 2013
- * Karen will work on Allele-Phenotype data submission spreadsheet/table (form exist5 KB (843 words) - 16:32, 4 December 2014
- * Chris and Karen playing with pathways diagrams on WikiPathways, Google Slides, and Prezi (S6 KB (823 words) - 19:38, 2 January 2014
- * Paul: Karen, what would we need for a curator/author template for a Nature of Allele mi5 KB (794 words) - 16:30, 3 June 2021
- * New object data from the journal first-pass form is sent to Karen, who makes sure the information is entered correctly7 KB (1,133 words) - 20:36, 23 July 2013
- * Karen may be able to go; she will contact Kimberly for any pertinent information * Karen: This is something the data commons really wants11 KB (1,676 words) - 15:28, 2 May 2019
- ** Raymond, Ranjana, Gary, Jae and Karen ok to have a monthly digest. Chris, Wen no email6 KB (906 words) - 15:34, 6 December 2018
- *Karen and Daniela need to get tokens6 KB (903 words) - 15:28, 2 April 2020
- '''Decide how to handle upload of Genetics papers - Karen, Juancarlos, Kimberly'''<br>7 KB (1,103 words) - 18:08, 16 August 2010
- * Daniela and Karen can draw up a mock publication to look at as a template6 KB (927 words) - 14:23, 10 August 2017
- on tazendra /home/azurebrd/work/parsings/karen/20150925_witting_papers/simple_paper_title_search.pl10 KB (1,650 words) - 18:12, 29 January 2024
- * Karen: would be good to have an immediate report of such instances after they occ5 KB (880 words) - 15:40, 3 September 2020
- **Daniela and Karen used it for a conference call - screen sharing is possible, but bad when sc7 KB (1,137 words) - 17:57, 17 November 2016
- *At Biocurator meeting, Karen met with Marc Gillespie to figure out how WormBase could best work with Rea6 KB (944 words) - 16:25, 1 November 2012
- * Karen brought up that the wrong author was emailed for AFP (Author First Pass)6 KB (912 words) - 01:40, 15 September 2017
- * Karen and Juancarlos working on ?Construct OA6 KB (801 words) - 17:29, 2 July 2014
- * Karen will present Process/Topic slides (take over from Chris)6 KB (857 words) - 16:01, 2 October 2014
- Caltech: Wen Chen, Xiaodong Wong, Karen Yook, Mary Ann Tuli7 KB (907 words) - 19:36, 11 April 2014
- Added Brief_id to ?Position_Matrix for Xiaodong and ?Molecule class for Karen8 KB (915 words) - 11:10, 21 December 2011
- *Karen will format tomorrow for the bibliography and so will be off Google Docs6 KB (971 words) - 16:24, 6 October 2011
- *Karen attended7 KB (1,047 words) - 15:34, 4 April 2013
- *Karen gave Michael a list of molecules to run through Textpresso7 KB (1,117 words) - 16:39, 4 August 2011
- * Karen took the "Titles" analysis, filtered out words with less than 10 hits, high7 KB (1,059 words) - 15:37, 1 August 2013
- *Karen spoke to Alex Pico7 KB (1,123 words) - 16:39, 6 December 2012
- * Daniela (Seq features), Ranjana (Disease), Xiaodong, Karen and Mary Ann are ready to add their data types7 KB (1,079 words) - 19:04, 6 November 2014
- ** 0935-0945 - Automated identification of data - Karen Yook8 KB (1,130 words) - 13:27, 4 February 2016
- ...r||Construct-Reporter||cns_reporter||multiontology||values in cns_reporter-Karen is OK in turning the list into an ontology||-||yes||yes if no transgene is ...Construct Type||cns_constructtype||ontology||right now is not an ontology, Karen said we can turn this in an ontology, too||-||yes||yes if no transgene is s21 KB (3,194 words) - 02:08, 17 May 2018
- ...new transgenes or strains that are not in WB. Daniela will need to contact Karen for transgenes and Paul D for STRAINS in order to create new objects.11 KB (1,190 words) - 19:16, 26 September 2019
- ..." Variation "WBVar". use name server to map variation to gene, or the file Karen gave you to map variation to gene for variation OA. **caught-up at acedb reading: WBInteraction0500069 (Karen), new line in remark field. fixed in .ace file.50 KB (5,228 words) - 15:10, 21 July 2017
- *Karen will send Todd examples of Anatomy_term/Anatomy_name links that need to be7 KB (1,158 words) - 17:20, 3 May 2012
- * Karen will send around a working OBO file8 KB (1,218 words) - 17:46, 2 April 2014
- * Ranjana will discuss the strain curation pipeline with Mary Ann and Karen8 KB (1,289 words) - 18:11, 10 November 2016
- *Karen, Kimberly, Michael, and Daniela going8 KB (1,161 words) - 16:34, 7 March 2013
- Proposed by Karen Yook<br>15 KB (1,645 words) - 18:54, 23 January 2014
- * Karen sent 280 molecules to CHEBI that we have curated with but don't yet have a8 KB (1,234 words) - 12:36, 4 June 2014
- * Wen will send to Karen, who is managing metabolites as part of molecule class9 KB (1,336 words) - 15:32, 2 June 2016
- * Gary, Karen, Chris, and Juancarlos working on adapting the data models and Phenotype (a8 KB (1,220 words) - 16:26, 3 September 2015
- * Chris, Daniela, Karen, Kimberly, Nick, Wen attending ...x page at Alliance, with brief metadata - can we store it in CaltechData = Karen and Wen will talk to the library36 KB (4,994 words) - 17:27, 14 February 2024
- * Karen has CRT monitor in her office10 KB (1,664 words) - 17:02, 4 December 2013
- ...how to treat this type of data will help provide a blueprint for the AGR.[Karen, Micahel H., ??]11 KB (1,649 words) - 16:10, 19 July 2018
- additions (Karen Y.)15 KB (1,756 words) - 11:21, 21 December 2011
- ...rs will be sent to the GO linking crew: Kimberly, Ranjana, Daniela, Chris, Karen, and Paul13 KB (2,118 words) - 16:51, 20 September 2011
- ?Molecule - fix ?Phenotype tags missed from original submission + additions (Karen Y.)15 KB (1,622 words) - 11:11, 21 December 2011
- * Not sure, should ask Karen11 KB (1,782 words) - 17:55, 13 May 2021
- Participants: Daniela, Karen, Wen, Jin, Shrek12 KB (1,930 words) - 17:12, 1 February 2018
- **gain of function-> we have some gain of function in overexpression. Karen mentioned she annotates overexpression and phenotypes and when possible she12 KB (1,878 words) - 15:55, 6 September 2012
- next if ($id =~ m/^WBPaper00029359/); # skip for Karen, chronograms. 2013 10 0118 KB (2,743 words) - 17:14, 16 March 2023
- ...(nor synonyms) if you need either of those you'd have to query WS for it, Karen probably knows how, she does it for other objects -- J ok, I don't think I' Karen, do we have one ?104 KB (15,303 words) - 19:39, 11 May 2023
- /home/acedb/karen/molecule/chebi_missing/find_missing_chebi_in_other_oa.pl |+'''postgres tables for the Molecule class<br> dumper on tazendra at karen/WS_upload_scripts/Molecule/dump_molecule_ace.pl'''50 KB (6,966 words) - 19:15, 13 August 2020
- *''Molecule_regulator'' - (multiontology like app_molecule) Karen's molecule ontology, and a way to inform her non-existing molecules. you wi ..."Allele" field, the script looks in '''<need to check with Juancarlos and Karen for this>''' to see if the variation is affiliated with a gene(s) according59 KB (8,367 words) - 22:00, 14 December 2018
- ...Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook29 KB (4,152 words) - 20:29, 30 July 2019
- '''postgres tables for the Molecule class<br> dumper on tazendra at karen/Molecule/dump_molecule_ace.pl'''37 KB (5,333 words) - 19:07, 27 June 2019
- [http://www.wormbase.org/db/misc/person?name=WBPerson1816;class=Person Karen Oegema] and [http://www.wormbase.org/db/misc/person?name=WBPerson283;class=39 KB (4,797 words) - 22:32, 11 August 2010
- |3 ||Curator||Name of Curator || James Done(first then replace with) Karen Yook<br/> (insert for all rows) ||Required||vcd_curator36 KB (5,076 words) - 01:38, 2 March 2016
- Karen Yook/wormbase- Caltech/@wbperson71229 KB (4,082 words) - 19:15, 11 April 2014
- < Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook > Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook235 KB (23,325 words) - 10:33, 3 July 2014
- Karen Yook/WormBase-Caltech/@wbperson71237 KB (5,533 words) - 19:17, 11 April 2014
- Karen Yook/WormBase-Caltech/@wbperson71237 KB (5,533 words) - 19:17, 11 April 2014
- ...ID, you can change the number based on the number in the pgid field. When Karen creates a new molecule object (only other config that creates IDs automatic120 KB (19,719 words) - 16:44, 20 October 2023
- $datatypesAfpCfp{'chemicals'} = 'chemicals'; # added for Karen 2013 10 02144 KB (18,174 words) - 19:56, 21 January 2021
