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- *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi Curation status form] has lists, but not completely up-to-date. ! Number of papers flagged manually (from curation status form)5 KB (746 words) - 18:57, 10 August 2010
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- ...plementation using the CCC categories, submit the resulting sentences to a curation form, make annotations, and download the annotations in either a simple thr ...Textpresso using their chosen criteria and export the sentences to the CCC curation form.17 KB (2,749 words) - 20:04, 21 January 2011
- 17 KB (2,104 words) - 22:44, 17 December 2014
- Effective Textpresso searches, and subsequent curation, require the most complete lists of gene and protein names possible. In addition, some types of curation may require matching gene names only, others matching protein names only, o5 KB (857 words) - 23:28, 23 August 2011
Page text matches
- **[[First-pass to Curation|Quick summary]] *[[Curation Tasks]]3 KB (325 words) - 17:36, 25 April 2023
- ...stating ‚"we did RNAi against unc-22" is not enough information for proper curation. We need to unabigiously assign the sequence used in an experiment. In the [[Category:Curation]]530 bytes (85 words) - 18:32, 16 August 2010
- * qPCR data curation ...ges for ?Expression_cluster and ?Analysis to accommodate the need for qPCR curation.2 KB (253 words) - 14:58, 13 March 2014
- ...lable, scripts will run to generate and populate the tables needed for the curation form. ...mail alert telling them that there is/is not new source data available for curation.1 KB (201 words) - 20:17, 29 August 2013
- ===Community Curation=== ...one sort of data type and do not really fall under the remit of Community Curation.1 KB (165 words) - 15:47, 10 April 2015
- [[Category:Curation]]184 bytes (28 words) - 18:47, 17 August 2010
- ...sc/wormbase-presentations/2005.11-SAB-CSHL/AP-KVA-RK-2005-SAB-curation.ppt Curation update, Andre Petcherski, Kimberly Van Auken, Ranjana Kishore] ...rmbase-presentations/2005.11-SAB-CSHL/CB-2005-SAB-Phenotypes.ppt Phenotype curation, Carol Bastiani]2 KB (238 words) - 12:04, 20 January 2011
- ...nt (CC) Terms. This index is organized alphabetically and based solely on curation. ...nd annotations to Protein2GO and return a status message at the top of the curation page.3 KB (431 words) - 14:55, 8 July 2014
- ***Monday - dictyBase will identify PDFs for curation ...l process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra2 KB (376 words) - 20:49, 28 June 2012
- ...> identification and automatic extraction of text for <span class="SpellE">curation</span>. <span style="mso-spacerun: yes"></span>In <span class="SpellE">dat ...ch as <span class="SpellE">Phenote</span> for further <span class="SpellE">curation</span>.<span style="mso-spacerun: yes"></span>4 KB (573 words) - 23:46, 13 August 2010
- == Brugia - update on annotation and curation effort == MP - Outlined protocol developed at Hinxton for curation of Brugia malayi gene models. DB ready for handover to WashU. WashU will lo1 KB (228 words) - 16:54, 6 July 2012
- [[Category:Curation]]174 bytes (26 words) - 23:17, 13 August 2010
- [3] You'll note that curation spans releases. With regards to the week counter, I'm not sure if this was ==== Curation ====2 KB (328 words) - 13:05, 2 June 2014
- #[[Author Curation]] [[Category:Curation]]1 KB (130 words) - 21:21, 15 March 2021
- All papers in the list have the curation flag 'Phenotype2GO' in the paper_editor.cgi [[Category:Curation]]2 KB (313 words) - 18:20, 16 August 2010
- [[Category:Curation]]195 bytes (25 words) - 17:50, 16 August 2010
- '''1030 - 1130''' Sequence curation including all those genomes Sequence Curation in C. elegans and curation tools- Paul Davis3 KB (357 words) - 20:30, 6 June 2014
- [[Category:Phenotype Curation]]313 bytes (41 words) - 20:45, 24 September 2010
- 2) Data integration: The curation tool Wormbase provides to approve the annotations could produce a GAF file.223 bytes (34 words) - 17:30, 19 April 2011
- ...get associations made as quickly as possible (better for users, helps for curation). [[Category:Curation]]986 bytes (140 words) - 19:42, 10 August 2010
- == Phenotype Curation (Ranjana / Chris) ==1 KB (155 words) - 17:01, 19 November 2015
- *manual curation is supposed to start as soon as [[NGASP|NGASP]] predictions for the new ass *EMBL/GenBank submission is supposed to start together with manual curation.2 KB (324 words) - 19:34, 11 August 2010
- == Topic Curation ==1 KB (164 words) - 17:33, 15 January 2015
- == GO-CAM model/pathway curation with orthology data == == Curation program for Summer undergraduate students ==2 KB (303 words) - 18:23, 16 April 2020
- =WormBase Curated Data Types and Curation Methods= ...that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''9 KB (1,174 words) - 18:30, 29 August 2012
- == S. ratti community curation == ...the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?2 KB (373 words) - 17:59, 2 March 2023
- ** We may allow the community to use APOLLO for curation within a year. ** WormBase is one of the few MODs doing sequence-based curation. We need to identify who else is doing this so that we can collaborate. Thi1 KB (229 words) - 16:31, 2 November 2023
- *For example, creating new categories for curation of GO Molecular Function terms related to enzymatic activity by selecting s ...read for another purpose, such as concise descriptions or reference genome curation.3 KB (425 words) - 22:35, 16 August 2010
- [[Category:Curation]]434 bytes (49 words) - 16:49, 5 June 2013
- === Curation === ...e under version control, maintained by a combination of scripts and manual curation3 KB (405 words) - 13:18, 15 January 2016
- [[Category:Curation]]303 bytes (47 words) - 23:22, 13 August 2010
- [[Category:Curation]]317 bytes (48 words) - 18:21, 16 August 2010
- === Strain curation at Caltech ===1 KB (241 words) - 18:19, 7 February 2019
- ::Kimberly Van Auken (interested in how to coordinate with BioGrid curation efforts) == [[Working Group:Curation Priorities|Curation Priorities]] ==2 KB (306 words) - 15:01, 14 January 2016
- [[Category:Curation]]354 bytes (43 words) - 17:47, 17 August 2010
- * KH: Second phase of the migration was the data capture and curation * (discussion about current vs delayed updates of curation databases)1 KB (152 words) - 16:10, 5 April 2018
- [[Category:Curation]]350 bytes (44 words) - 19:41, 10 August 2010
- ...na will discuss how to condense and streamline a presentation on community curation ** We should have a talk about LEGO curation and pathways; Kimberly happy to present4 KB (640 words) - 19:07, 11 February 2016
- [[Category:Curation]]473 bytes (68 words) - 18:50, 10 August 2010
- *dictyBase (Bob) will send Textpresso PMIDs for CCC curation every Monday '''Results File to Curation Tool'''1 KB (205 words) - 17:10, 8 November 2012
- === Sequence curation for phenotypic alleles in papers === ...Oliver Hobert : some published alleles are falling through the cracks for curation; paper mentioned is missing sequence and phenotype3 KB (436 words) - 15:07, 22 July 2019
- * How should we prioritize RNAi versus other gene function curation? === 10:45 - 12:15 Sequence analysis and curation ===4 KB (462 words) - 08:54, 8 October 2014
- [[Category:Phenote curation tool]] [[Category:Phenotype Curation]]1 KB (190 words) - 20:54, 24 September 2010
- == Allele / variation curation == ==Allele curation==4 KB (613 words) - 17:56, 16 January 2020
- ...ration is underway, but Noctua is still under beta testing. Noctua is a GO curation tool that “allows curators to connect together multiple annotations to gi3 KB (457 words) - 19:24, 7 July 2016
- ** 09.45 Caenorhabditis sequence curation - Gary Williams ** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli3 KB (438 words) - 07:19, 6 October 2014
- [[Category:Curation]]437 bytes (67 words) - 18:57, 16 August 2010
- As said before we are currently running Variation curation (molecular details) in a maintenence mode where -Can we make an easy to use curation tool/submission form? Mary Ann made one. It's available and easy to extract3 KB (441 words) - 17:15, 1 August 2019
- *Discussion of what features are commonly used in the curation status form252 bytes (35 words) - 17:49, 12 May 2022
- * WashU sequence curation hand over to Hinxton: stlace is now taken over by Hinxton. All C. elegans c * Progress report: Caltech can dump out curation status info from postgres database. We can also do comparision from release2 KB (232 words) - 09:58, 2 August 2013
- [[Category:Curation]]640 bytes (97 words) - 22:32, 16 August 2010
- * Aim 2. Gene-centric curation. None of the paragraphs mention any work or plan for migrating that data cl * Aim 4 now lists worm-specific curation and tools we want to continue to support, outside Alliance2 KB (326 words) - 16:00, 8 September 2022
- #[[Clone CCC curation form for dictyBase - Juancarlos, Kimberly]] #[[dicty curation - Petra, Kimberly]]3 KB (439 words) - 21:25, 6 November 2012
- curation best practices are widespread or saving much curation time when they do participate3 KB (564 words) - 19:15, 10 August 2010
- ==Examples of novel groups of curation issues.==291 bytes (53 words) - 10:19, 21 January 2011
- *How do we assign new strain IDs at the point of curation? ...ID already exists; if not, can request a new strain ID to use in postgres curation database.5 KB (816 words) - 16:43, 17 May 2018
- [[Category:Curation]]372 bytes (60 words) - 20:54, 10 August 2010
- ...e is an idea to make the human disease data more accessible and extend the curation. Discussion items: * Curation3 KB (450 words) - 16:07, 7 August 2014
- ...mber), should we be creating new papers at the alliance first or in the WB curation database and then importing them in. ...WB to Alliance. Paper approval and acquisition are the first steps in our curation process and we should make sure we've got a good plan in place before we ma1 KB (229 words) - 16:05, 15 July 2021
- == Themed Curation == = Curation Focus ideas for themed releases =2 KB (361 words) - 16:32, 17 October 2013
- [[Category:Curation]]608 bytes (98 words) - 18:31, 11 August 2010
- == Sequence Curation == ...base.org/group/caltech/topics topics]; The literature and large-scale data curation team at the California Institute of Technology.5 KB (757 words) - 01:45, 2 June 2014
- This project is broken down into three main sections: central database, curation, and website. ...gies to work with the new database system: Hinxton Curration tool, CalTech curation tool and Datomic API's for the website (Catalyst)5 KB (842 words) - 19:41, 17 February 2016
- ...y this page should point to a table that is a comprehensive display of the curation status of a given paper as well as a table that can show how far we've come *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi curation status]6 KB (841 words) - 08:24, 24 October 2014
- In the context of first pass curation, SVMs are used to classify documents with respect to the type of data they770 bytes (117 words) - 13:08, 20 November 2009
- ...some paper types from the searches would more accurately reflect the real curation pipeline. [[Category:Curation]]2 KB (259 words) - 18:08, 16 August 2010
- Phenotype curation at WormBase entails the assignment of a phenotype term from the ''C. elegan ===Sources for allele phenotype curation===7 KB (1,148 words) - 23:02, 23 October 2014
- [[Category:Curation]]653 bytes (82 words) - 19:01, 10 August 2010
- == Genetomic / curation database ==2 KB (296 words) - 01:51, 5 September 2015
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- 1. It appears on the first-pass curation checkout page. The paper is in grey until a pdf or document is available fo ...d for a specific data type is stored in postgres and can be mined from the curation status form [http://wiki.wormbase.org/index.php/New_2012_Curation_Status he3 KB (561 words) - 21:38, 15 August 2013
- [[First-pass to Curation]]<br> ...~postgres/cgi-bin/curator_first_pass.cgi Example of new curator first-pass curation.cgi]2 KB (241 words) - 23:04, 13 August 2010
- ** similar problem to redundancy during GO curation * different approaches between the databases for curation/prediction2 KB (213 words) - 18:30, 1 February 2018
- **3e i. Data Curation ***Does the resource provide documentation of the data curation process/deposition workflow? Please describe, with a url link to public doc2 KB (233 words) - 15:30, 21 July 2022
- ...nd Chris joined a Teaching Curation workshop to teach undergraduates about curation. Chris is currently processing the student submissions to remove redundanci ===WormBase Paper Curation charge===3 KB (525 words) - 17:20, 4 April 2024
- === LEGO Curation === * Curation Stats numbers spreadsheet6 KB (857 words) - 16:01, 2 October 2014
- [[Category:Curation]]271 bytes (29 words) - 22:34, 11 August 2010
- ...nformation we need for curation and search and retrieval functions for the curation form.2 KB (261 words) - 17:08, 16 April 2013
- ...ng that we have been thinking of how to rationalise is the TierI / Tier II curation split.''' '''PS - We should approach curation de novo and forget the history'''3 KB (564 words) - 17:27, 20 December 2012
- *Chris' will present flagging and curation pipeline overview *GO curation pipeline3 KB (349 words) - 19:25, 18 January 2013
- * Focusing on curation process (as opposed to publication process) ** Curation4 KB (544 words) - 16:22, 5 January 2017
- ==Curation analysis features== ...e || automating newmutant sentence identification/extraction for phenotype curation.6 KB (1,024 words) - 23:02, 13 August 2010
- * Summary of curation work - this summary should be curator driven, in some cases the summary wil |'''Data class/type'''||'''Curation focus'''||'''Postgres Tables'''<br>([[all OA tables | oa tables]])||'''Cura4 KB (580 words) - 18:13, 6 October 2017
- [[Category:Curation]]633 bytes (76 words) - 18:59, 10 August 2010
- [[Category:Curation]]635 bytes (76 words) - 19:01, 10 August 2010
- ...stion: do we want to take 'functional annotation' papers out of Textpresso/Curation pipelines? === Topic Curation ===6 KB (823 words) - 19:38, 2 January 2014
- * Need to chase up the 111 legacy pending curation gk alleles * Need to chase up the 766 legacy pending curation ok alleles2 KB (306 words) - 08:41, 7 June 2019
- [[Category:Curation]]533 bytes (81 words) - 23:09, 13 August 2010
- * <b>Gene-structure curation</b> * Process and pathway curation and display (Karen; 10 minutes)5 KB (644 words) - 22:02, 23 January 2013
- [[Category:Curation]]856 bytes (106 words) - 18:22, 16 August 2010
- = Specifications for Gene - GO Curation Status Form = ...ns protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.3 KB (487 words) - 20:29, 18 March 2019
- ==Pick a paper and access the curation form== * Access the curation.cgi from the WBPaperID page itself4 KB (751 words) - 23:40, 13 August 2010
- ...there is a new model for GO annotations that will allow us to have all GO curation in WormBase. * GO curation model change2 KB (288 words) - 16:54, 4 December 2014
- [[Category:Curation]]395 bytes (55 words) - 21:11, 23 July 2013
- **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc. **Curation Status - integration with curation databases - which ones?6 KB (901 words) - 19:21, 29 November 2011
- We also hold "curation data", for example the curation status of a paper, separately * Some possible changes to WB models to improve our paper, author, person curation pipelines3 KB (487 words) - 16:36, 18 March 2021
- * Curation status and effort. * Topic Curation – how we do this.5 KB (763 words) - 00:51, 19 September 2014
- [[Category:Curation]]600 bytes (92 words) - 18:46, 17 August 2010
- * Yesterday we (FlyBase, ZFIN, and WormBase) presented paper curation status tracking * WebPhenote is currently being built for human phenotype curation5 KB (715 words) - 15:49, 4 August 2016
- [[Category:Curation]]1 KB (159 words) - 18:33, 16 August 2010
