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- * Karen raised the possibility of manual curation being required. This would requir2 KB (324 words) - 17:41, 2 June 2016
- * Karen : Acknowledge people who curated with prizes or callout ? * Karen : worm oscar trophies, a worm holding a worm.7 KB (1,113 words) - 18:19, 6 April 2023
- Karen introduced Nick Stiffler.2 KB (347 words) - 17:44, 7 November 2019
- * Daniela, Chris, Karen are the only Caltech curators who use it. * Juancarlos has emailed Sibyl + Matt + Caltech with what we know so far. Karen and Chris, please reply if you have other name service uses beyond what Dan5 KB (759 words) - 15:02, 11 September 2019
- * Karen proposed having functionality in the OA to dump specific data from the OA i * Karen will look into what this would involve; if it's worthwhile5 KB (715 words) - 15:49, 4 August 2016
- * Ranjana, Karen, and Chris will work out a pipeline to link elegans gene variations and phe * Karen talking with Michael Witting8 KB (1,305 words) - 23:24, 3 June 2015
- *Daniela and Karen invite PomBase to start harmonizing a person model, will send all Alliance2 KB (325 words) - 15:24, 7 October 2021
- ** Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, Ranjana Kishore, Juancarlos Chan, Marie-Cla * Karen Yook -- ''making more use of microPublication''5 KB (696 words) - 13:32, 13 July 2018
- *Karen, Raymond, Chris will talk to Todd *Karen has encountered some issues; needs to reproduce9 KB (1,302 words) - 16:38, 2 June 2011
- * Karen created Lipid metabolism pathway ...wbank are updating their WormBook chapter on innate immunity; working with Karen on WikiPathway8 KB (1,147 words) - 15:33, 7 May 2015
- ...Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat2 KB (379 words) - 17:22, 7 January 2021
- * Karen and Daniela in touch with e-publishing platforms (HighWire [http://home.hig * Karen and Daniela spoke to person at HighWire5 KB (831 words) - 16:49, 1 December 2016
- * [[https://github.com/WormBase/website/issues/2015 2015]] External URL, karen and Abi are working on this * [[https://github.com/WormBase/website/issues/2016 2016]] External URL, karen is working on this - '''NOT HELPDESK'''6 KB (909 words) - 21:56, 21 November 2013
- *Karen and Juancarlos will discuss for variations today *Wen and Karen working on how to house the data8 KB (1,225 words) - 16:33, 3 October 2013
- *Daniela, Juancarlos, and Karen imported Extrachromosomal array transgenes into the Transgene OA *Daniela and Karen will discuss cost-benefit of objectifying Ex transgenes7 KB (1,070 words) - 17:47, 1 March 2012
- | [[User=kyook|Karen Yook]] | [[User:Kyook|Karen Yook]] (phenotype)16 KB (2,207 words) - 23:06, 9 January 2014
- * 20151013 /home/acedb/karen/mid_release_scripts/nbp_maryann/parse_maryann.pl has been updated to remove *Move and rename file onto tazendra to /home/acedb/karen/mid_release_scripts/nbp_maryann/NBP_latest6 KB (920 words) - 00:20, 14 October 2015
- ...entation of GSoC project (Valerio, Magz, Paul, Stavros, Kimberly, Daniela, Karen)2 KB (354 words) - 16:05, 16 September 2021
- Karen is uploading for CalTech2 KB (339 words) - 16:20, 20 April 2017
- * New object data from the journal first-pass form is sent to Karen, who makes sure the information is entered correctly3 KB (471 words) - 19:53, 19 April 2012
- *The proposed solution will work: Sibyl, Daniela Karen will work on implementing it3 KB (421 words) - 16:39, 20 October 2016
- *Karen writing summaries for processes *Look at Processes in the Process OA by querying for "Karen" as a curator5 KB (843 words) - 17:26, 1 November 2012
- [Karen] The strains are real so they should be captured. However the authors need3 KB (458 words) - 16:53, 1 February 2024
- ***Transgene - Karen2 KB (383 words) - 11:59, 15 February 2013
- ...al is to put WBPerson IDs in column 6 for personal communications. Chris & Karen will check if this will work. * Karen spoke to CHEBI personnel on Tuesday6 KB (861 words) - 19:23, 5 November 2020
- * Process and pathway curation and display (Karen; 10 minutes) **journal article processing (GSA markup) Arun, Karen (15 min)5 KB (644 words) - 22:02, 23 January 2013
- *Karen and JD working on *Karen explained what should be displayed, where and how on the page9 KB (1,339 words) - 19:02, 31 January 2013
- Next Help Desk Officer -Karen, July 10th-24th.3 KB (454 words) - 18:36, 10 July 2023
- **Caltech: Chris, Gary, Juancarlos, Karen, Kimberly, Mary Ann, Paul, Ranjana, Raymond, Wen, Cecilia3 KB (435 words) - 19:56, 4 March 2016
- ...ting with Mary Ann and or Alex. Either add yourself to the Calendar or let Karen know when you have time to chat. * Chris, Karen, et al meet with Alex10 KB (1,485 words) - 18:08, 5 March 2014
- -Karen is talking to other groups about allele curation (ZFIN, RGD).3 KB (441 words) - 17:15, 1 August 2019
- ...ariation/transgene class - Main people being Mary Ann, Daniela, Chris, and Karen, others are welcome. Visit the construct model requests [http://wiki.wormba *Karen will move ahead with the ?Construct model just for the context of genome-ed10 KB (1,583 words) - 18:16, 5 February 2014
- *** Should this be an agenda item for this meeting? @karen **21:30 – 23:00 (9:30-11:00) Odd "A" Posters (Mary Ann and Karen) - Pauley Pavilion8 KB (1,291 words) - 21:09, 23 June 2013
- ...Molecule XREF Gene_regulator #Boolean // ?Molecule model - Karen Yook5 KB (514 words) - 21:15, 7 December 2010
- Based on input from Tim Schedl and Karen Yook, the script does not link only the gene portion of any transgene. For ...eneral and should be automated is incorporated into the linking script. If Karen finds any new objects in the article that were not declared by the authors,14 KB (2,324 words) - 19:51, 9 January 2015
- *Daniela [Karen/Raymond filling in as conference moderator]3 KB (420 words) - 16:02, 17 August 2017
- * The AFP pipeline is currently emailing authors from karen's e-mail address * Gary S., Karen, Kimberly, and Chris have responded to [https://doodle.com/poll/xzkxet8sb579 KB (1,366 words) - 15:19, 6 September 2018
- *Juancarlos and Karen were discussing creation of a form to allow curators to update/edit drop do3 KB (436 words) - 17:59, 11 July 2013
- * Should Doug and Karen decide topic? * Paul S. will discuss with Karen and Doug about topics8 KB (1,224 words) - 15:34, 21 July 2016
- *** Karen: No, we should insist authors use the proper names * DOI should work right away; Karen will look into if there's a problem/typo9 KB (1,368 words) - 15:27, 4 October 2018
- *Karen needs a curator to view a micropub with large quantities of gene regulation3 KB (503 words) - 21:00, 6 January 2023
- // Molecule class Model - Proposed by Karen Yook WS2176 KB (543 words) - 23:29, 15 March 2016
- *Responsible data curator: Kimberly (pre-postgres paper entry); Karen (post-postgres paper entry) *Responsible data curator: Kimberly, Karen17 KB (2,401 words) - 22:36, 29 November 2017
- * Maybe Karen/Daniela could do a webinar during the Nov 14 slot * Daniela and Karen might be able to join Bay Area worm meeting11 KB (1,664 words) - 16:29, 7 December 2017
- *Additional error check for Karen - duplicate interactions on multiple rows *Ranjana, Raymond, Paul, Hillel, and Karen will speak to her6 KB (983 words) - 18:02, 12 July 2012
- Karen just started helpdesk, nothing outstanding - things dealt with by Faye3 KB (494 words) - 16:08, 4 June 2020
- *Solution from Karen and Chris: If the Hinxton name server already has the variation but it isn'3 KB (542 words) - 16:49, 1 July 2021
- * SOP? Karen wrote Wiki pages for molecule curation; she will look them over and can rev * Karen looking into it10 KB (1,586 words) - 15:30, 2 November 2017
- *Karen and Chris joined a Teaching Curation workshop to teach undergraduates about3 KB (525 words) - 17:20, 4 April 2024
- * Karen e-mailed around older proposal for work with Santiago Lombeyda * Karen wants to adapt Ranjana and James' automated gene descriptions for alleles6 KB (926 words) - 16:49, 3 December 2015
- ** 15.00 Process / Topic curation - Karen Yook3 KB (438 words) - 07:19, 6 October 2014
- Micropublication - Karen & Daniela3 KB (552 words) - 17:23, 3 January 2019
- * Karen: Nemametrix has been asking about how to donate to WB; we could certainly b3 KB (493 words) - 16:08, 16 March 2017
- 2) Karen wants to discuss Variation data with Mary Ann * Action Item: Mary Ann, Karen Y. set up call or something off line.7 KB (1,182 words) - 13:50, 20 April 2012
- .../forms/generic.cgi to have updateVariationObo populate based on this data. Karen, verify that this looks okay in the OA, ''it looks fine -k'', then we'll ne ...l to make the obo tables for taxon data '''DONE''', Karen runs /home/acedb/karen/processOA/update_obo_taxon.pl to populate data based on species_taxon.txt,20 KB (3,088 words) - 19:17, 13 August 2020
- *Karen working on it *Karen will send around7 KB (1,064 words) - 19:12, 3 November 2011
- ...cope for different things (please correct me if that's not what you said) Karen mentioned we have other sources for minting DOIs if Mike Cherry's 50k/year3 KB (511 words) - 18:54, 18 February 2021
- *Karen and Juancarlos will construct a ?Database class OA *Karen generated Wiki page: http://wiki.wormbase.org/index.php/OA_forms,_tables,_s13 KB (1,983 words) - 16:40, 7 November 2013
- Karen: Transgene model ...t the consensus was that this was a good idea. Going forward - Initially Karen will go through all the CGC strains that have transgene info and add it to13 KB (2,097 words) - 22:48, 7 April 2011
- * Karen working with this3 KB (561 words) - 18:39, 6 February 2020
- *WikiPathway for male mating (Karen made); Marc made mock page and put it up *Karen already doing this to some extent for processes7 KB (1,074 words) - 17:19, 4 October 2012
- **Karen's (InSilico) grant goals are to ...geneace dump. Could possibly just dump all Postgres data into one place, Karen's developers could write scripts to process that data;12 KB (1,809 words) - 16:33, 1 March 2018
- * starting to work with Chris and Karen on developing cross-products, still in exploration phase *Gene Function and Interaction google docs (Chris, Gary S., Karen, Kimberly)10 KB (1,453 words) - 18:52, 4 February 2015
- * Name server. Manuel working on this, Daniela and Karen will reach out to him and let him know that down the road micropublication * Karen asking about some erroneous IDs used in the name server. Stavros says that10 KB (1,478 words) - 18:12, 30 May 2024
- * Karen trying to make the curation of constructs & transgenes easier ** Karen would take care of the details10 KB (1,464 words) - 17:09, 13 August 2015
- ** Karen: tools are still being developed; the platform is not being advertised as m * Karen: Micropublications team will reach out to curators to help build submission8 KB (1,121 words) - 14:01, 15 July 2019
- ...g 'where e>1' for example). <br>''where is the file ?'' I'm putting it in /karen/Gene_class unless you want me to put it somewhere else. ''that's good.'' ''4 KB (704 words) - 18:19, 28 June 2011
- * Daniela and Karen working on4 KB (544 words) - 16:22, 5 January 2017
- * Karen working with Michael Witting to pull in metabolomics data * Chris will give Karen a heads up next time the issue is intended to be discussed within the Allia9 KB (1,364 words) - 15:39, 7 February 2019
- * Pathways [Karen, 20]4 KB (462 words) - 08:54, 8 October 2014
- * Automated paper flagging and data identification (Karen)4 KB (640 words) - 19:07, 11 February 2016
- Karen has to report for jury duty and will miss the conference call.5 KB (796 words) - 21:05, 10 March 2014
- ...for readout into Phenote. The files are stored on tazendra in /home/acedb/karen/populate_gin_variation.5 KB (782 words) - 20:35, 24 September 2010
- <br>I'll take care of it. -Karen4 KB (610 words) - 13:12, 14 November 2014
- * Allele phenotype filter (Karen) * Show Gene and Allele names (Karen)10 KB (1,475 words) - 16:57, 5 November 2015
- * Karen requested option to curate constructs with human genes4 KB (695 words) - 14:44, 3 December 2020
- ** Pathways and Processes (Karen)5 KB (670 words) - 16:00, 5 August 2021
- ...iage working group: It will be good if MODs can share their paper sources. Karen, Michael Mueller, and Kimberly will be involved in this WG.4 KB (694 words) - 21:33, 19 December 2019
- *** Reagents -> Antibody -> Daniela; Molecules, transgenes, constructs -> Karen5 KB (787 words) - 18:10, 25 August 2022
- Caltech - Karen, Kimberly, Paul, Ruihua5 KB (746 words) - 18:57, 10 August 2010
- Karen would like to use this underused class for phylogenetic gene clusters7 KB (881 words) - 15:46, 21 November 2013
- *Phenotype -Karen *Process -Karen14 KB (2,213 words) - 19:26, 12 February 2019
- ** Karen will help with Construct, Transgene, Topic, Molecule OAs5 KB (670 words) - 15:31, 3 June 2021
- * Karen working with AddGene to pull in worm reagents (plasmids/constructs)5 KB (689 words) - 15:35, 7 April 2016
- ...t upon internal discussion it seemed that this might be better placed with Karen at Caltech.8 KB (1,073 words) - 15:31, 14 December 2012
- * Micropublications will have a booth (Karen and Daniela will attend)5 KB (747 words) - 16:31, 5 December 2019
- ** Still uses old Textpresso-Dev; no longer needed? Probably not; Karen can look if there's anything there worth keeping (nothing critical)5 KB (873 words) - 14:41, 4 February 2021
- *Gary and Karen talking about fixing/cleaning up Phenotype Ontology5 KB (847 words) - 17:49, 1 March 2012
- ..._name mapping in both files by both public_name and WBVar, emails curator (Karen) if it's different. The curator needs to edit the obo_tempfile to resolve t8 KB (1,375 words) - 05:12, 21 April 2020
- *Timeline [http://timeglider.com/timeline/cacc0f6f4491a510 proposal] by Karen6 KB (864 words) - 15:32, 6 June 2013
- * Karen will work on Allele-Phenotype data submission spreadsheet/table (form exist5 KB (843 words) - 16:32, 4 December 2014
- * Chris and Karen playing with pathways diagrams on WikiPathways, Google Slides, and Prezi (S6 KB (823 words) - 19:38, 2 January 2014
- * Paul: Karen, what would we need for a curator/author template for a Nature of Allele mi5 KB (794 words) - 16:30, 3 June 2021
- * New object data from the journal first-pass form is sent to Karen, who makes sure the information is entered correctly7 KB (1,133 words) - 20:36, 23 July 2013
- * Karen may be able to go; she will contact Kimberly for any pertinent information * Karen: This is something the data commons really wants11 KB (1,676 words) - 15:28, 2 May 2019
- ** Raymond, Ranjana, Gary, Jae and Karen ok to have a monthly digest. Chris, Wen no email6 KB (906 words) - 15:34, 6 December 2018
- *Karen and Daniela need to get tokens6 KB (903 words) - 15:28, 2 April 2020
- '''Decide how to handle upload of Genetics papers - Karen, Juancarlos, Kimberly'''<br>7 KB (1,103 words) - 18:08, 16 August 2010
- * Daniela and Karen can draw up a mock publication to look at as a template6 KB (927 words) - 14:23, 10 August 2017
- on tazendra /home/azurebrd/work/parsings/karen/20150925_witting_papers/simple_paper_title_search.pl10 KB (1,650 words) - 18:12, 29 January 2024
