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- 1 KB (203 words) - 22:50, 11 November 2010
- #REDIRECT [[Working Group:Handling Multiple Species]]53 bytes (6 words) - 14:15, 5 November 2010
- 819 bytes (130 words) - 10:04, 9 November 2010
- 944 bytes (115 words) - 14:04, 19 July 2012
- 58 bytes (9 words) - 19:25, 23 December 2010
- * Stream out working flow ...net access? I will bring my Macbook. Hopefully I can tunnel into my Sanger working space.23 KB (3,248 words) - 12:58, 22 September 2014
- * [[Working Group:Handling Multiple Species:Meetings-2010.11.09| 2010.11.09]]885 bytes (118 words) - 16:42, 9 November 2010
- 430 bytes (67 words) - 16:41, 9 November 2010
- #REDIRECT [[Working Group:Handling Multiple Species:2010.11.09]]64 bytes (6 words) - 16:41, 9 November 2010
- 335 bytes (26 words) - 17:18, 22 February 2011
Page text matches
- ==AGR working group updates== ===UI Working Group===2 KB (270 words) - 16:48, 3 February 2017
- This is the "Working Groups" page. Working Groups are intended to be groups of WormBase staff focused on particular is ...ed Working Groups. Please feel free to add a group or add your name to any group to which you would like to join:2 KB (306 words) - 15:01, 14 January 2016
- == AGR Portal Use Case Working Group update == * Waiting to discuss orthologies with Orthology Working Group before adding orthology groups to search3 KB (421 words) - 16:39, 20 October 2016
- == AGR working group updates/action items == == AGR working group updates ==2 KB (369 words) - 16:38, 6 October 2016
- ==Phenotype working group==902 bytes (104 words) - 19:51, 20 November 2014
- Raymond has been working on a prototype. People should try it and give feedback. ...ess than 3 weeks. The Disease working group is interfacing with UI working group to get a prototype up and running.1 KB (203 words) - 16:53, 16 February 2017
- Will send the AGR SAB Staff Report to the group ...his sketch needs vision of the 5 year plan showing the cohesion of the AGR group members (common infrastructure and common curation efforts).4 KB (574 words) - 01:54, 2 March 2018
- == Alliance scRNAseq Working group == *The Alliance will set up a new working group for scRNA seq data.2 KB (414 words) - 16:14, 18 May 2023
- * Portal implementation working groups ** Curators / subject-matter-experts needed for each group (but not too many!)2 KB (351 words) - 18:32, 15 December 2016
- ...tes from the independent sites and working groups (~two paragraphs/working group)814 bytes (129 words) - 16:35, 18 May 2017
- * Daniela and Karen working on * Working with Transgenome project and GSA4 KB (544 words) - 16:22, 5 January 2017
- == Alliance working group project plans == * Group has generated alignments between human and worm proteins (using UniProt pro3 KB (400 words) - 16:03, 15 March 2018
- * PR System working ** outstanding issue - group pattern, resulting image doesn't work903 bytes (127 words) - 14:33, 29 July 2014
- === Updates from AGR working groups === ...the next build (WS256) on hold? Probably not. OICR won't need to start the working on WS256 for ~4 weeks3 KB (501 words) - 17:29, 1 September 2016
- ...pparently not been working for some time; script for downloading WS is not working *The Complex Portal (EBI) group makes GO annotations to C. elegans protein-containing complexes1,006 bytes (150 words) - 16:06, 13 January 2022
- * Will there be (near)whole group attendance at the International Worm Meeting? * Any updates on portal 0.3 and working groups3 KB (541 words) - 15:58, 20 January 2017
- === Update from AGR portal use case working group === * Working group would like to know:5 KB (831 words) - 16:49, 1 December 2016
- --ticket #588 David Baillie from Vancouver group would like wormbase to fix the BC strains (gfp expression strains) display, * Hinxton & WashU working on Brugia (curation of gene models, RNASeq transcripts, introns, SL1s, expr1 KB (182 words) - 10:02, 2 November 2012
- ==Working Group==3 KB (325 words) - 17:36, 25 April 2023
- * Expression working group working with Brian Oliver to have GEO take in more structured meta data === Alliance Literature Group ===4 KB (605 words) - 15:21, 3 March 2020
- * [[Working Group:Handling Multiple Species:Meetings-2010.11.09| 2010.11.09]]885 bytes (118 words) - 16:42, 9 November 2010
- ...list options here available wherever lists are provided in WormBase (Sibyl working on it) * The Alliance interactions working group is considering proposing a greater alignment between GO interaction annotat4 KB (694 words) - 21:33, 19 December 2019
- * Fate of current and future working groups * Expression working group4 KB (575 words) - 18:18, 6 December 2018
- * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal phenotype term organization === AGR Disease working group ===7 KB (1,073 words) - 16:26, 2 March 2017
- ...enome location information for variants at point of curation. The Alliance working on generalising that. ...be a more appopriate task for a curation tool group, rather than variants group.3 KB (441 words) - 17:15, 1 August 2019
- * Working on modularization, which features to export * New data from Waterston group1 KB (176 words) - 10:55, 22 July 2009
- * Ranjana working with Juancarlos to run and update automated descriptions pipeline === AGR Portal Use Case working group update ===8 KB (1,289 words) - 18:11, 10 November 2016
- ...orarily deployed at http://dev.wormbase.org:9004/, Kimberly shared with GO group for feedback ** TODO this week: email GO group about whether their API could support some extra feature.2 KB (280 words) - 14:45, 12 April 2016
- * Raymond and Juancarlos have been working on === Alliance Literature Acquisition working group ===5 KB (701 words) - 15:38, 4 June 2020
- *Literature group is working on PDF acquisition, storage, and access for the Alliance ABC1 KB (153 words) - 15:50, 20 October 2022
- * Analysis working group: data freeze on September 10th.1 KB (200 words) - 09:42, 26 August 2009
- * Kimberly working on different C. elegans models * Working on several pathways simultaneously9 KB (1,377 words) - 16:44, 2 February 2017
- ...changes to the web display that we spoke about at our Interaction Working group meeting include:1 KB (219 words) - 22:52, 12 January 2011
- = FlyBase has a group of 200-300 testers for their new features. = #Is community curation working?1 KB (216 words) - 11:16, 19 January 2018
- === Working group discussions === * Bob Goldstein's group prepared software tools in their paper; could we make use of them?9 KB (1,490 words) - 15:35, 6 October 2016
- === AGR disease working group update === ...at a later release, probably as a work product of the AGR Variants working group11 KB (1,664 words) - 16:29, 7 December 2017
- ** Suggestion (Kimberly): form an internal WB working group to plan the transition from WB to Alliance. Paper approval and acquisition1 KB (229 words) - 16:05, 15 July 2021
- * The AFP group will work with Ranjana to incorporate it. Ranjana will prepare a mock by ne ** Working with two plant journals9 KB (1,366 words) - 15:19, 6 September 2018
- ** Automated gene descriptions - Ranjana, gene description working group * Micropublication group will apply for a workshop5 KB (698 words) - 16:11, 3 January 2019
- # Zoom channel for Alliance Working Group calls1 KB (211 words) - 17:49, 15 April 2021
- ...own definition of "allele" (and other terms) at AGR (with Variants working group) * Kevin working on import file (will use WS263 to be in sync with AGR 1.3 release in March/2 KB (327 words) - 16:50, 4 January 2018
- The group is getting the next release ready and it will include variations from diffe ...hologs: Discussions are very much in flux and there is no official working group, but there needs to be discussions of standard formats for data. Major qu3 KB (457 words) - 19:24, 7 July 2016
- * Interaction Working Group is talking about getting WormBase data into AGR2 KB (213 words) - 18:30, 1 February 2018
- ** Kevin & Michael are working on GBrowse config - communicate with them * WormMine tutorial - after Full Group call2 KB (252 words) - 15:53, 10 May 2013
- *Working to address issues raised at those meetings **Working to confirm errors using RNA-Seq data and ESTs4 KB (617 words) - 17:01, 19 July 2012
- *Working on data model for RO led to a discussion at Caltech about how much associat == Alliance Working Group on Literature Curation Pipelines ==11 KB (1,898 words) - 16:43, 7 June 2018
- * Have document of things to discuss as a group. ** Need to have a working procedure.3 KB (561 words) - 18:39, 6 February 2020
- ...ort:_August_2020#Subscribing_to_the_LabHeads_Mailing_List|Lab Heads Google Group Mailing list]] to receive these messages by email (instructions at the end subcommittee is working and will report to the community by the end of the year.4 KB (641 words) - 17:26, 10 November 2020
- * Chris will report back to group afterwards; hope to organize a process for acquiring "Core" certification f ...WormBase/website/issues/6869 Interaction external link outs to BioGRID not working on interaction pages]2 KB (263 words) - 15:49, 4 April 2019
- *We will NOT run through our talks, but can discuss slides with others in working groups. *Working Groups – ideas for groups include:5 KB (763 words) - 00:51, 19 September 2014
- * working this out project-wide * will contact intermine group, keep PS updated4 KB (624 words) - 17:15, 4 April 2013
- * [http://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/mario-de-bono Mario de Bono] * Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI3 KB (438 words) - 07:19, 6 October 2014
- *working on phenotype curation *Group met on Tuesday9 KB (1,302 words) - 16:38, 2 June 2011
- * Juancarlos and Raymond working on * Daniela working with Xiaodong to learn the curation process4 KB (604 words) - 15:28, 5 May 2016
- * We can communicate with Waterston group; are they collecting more data? * Disease working group setting up a face-to-face meeting12 KB (1,809 words) - 16:33, 1 March 2018
- * Is there a working list of Phenologs anywhere? See Ed Marcotte's paper * 1094 papers have species from Caltech group and ParaSite set. SELECT joinkey FROM pap_species WHERE pap_species IN ('65 KB (715 words) - 15:49, 4 August 2016
- === Human Disease working group meeting === *BioCADDIE developers are currently working on indexing datasets requested by the NIH for inclusion in a June 30 Protot9 KB (1,336 words) - 15:32, 2 June 2016
- * '''AI:''' Jae will write to the Alliance orthology working group email list to ask about this. ...lagging pipelines on Tuesday, the 25th, at the Alliance Literature Working Group5 KB (821 words) - 22:36, 20 February 2020
- * Raymond added back some deprecated cell group terms as obsolete terms * OBO-to-ACE script is working3 KB (427 words) - 15:32, 1 August 2019
- a GUS database (a collaboration involving J.Kissinger and a group from Shaghai). - a new MRC funded position is available for informatician working on7 KB (1,220 words) - 15:50, 25 November 2011
- ...o check to see if an issue is already claimed by someone before they start working on a reply. *1437 - ''still working on it- ky'' xEs12400 Vancouver large-scale strains and trangenes - Karen,6 KB (1,069 words) - 20:52, 23 July 2013
- === Alliance literature pipeline working group === * Has anyone gotten back to Carol Bult about WB/Textpresso membership in the group? Not yet8 KB (1,189 words) - 14:10, 5 July 2018
- === Alliance biological working groups priority === * Keep working on harmonization and LinkML models for data types5 KB (777 words) - 13:18, 1 April 2021
- ...eed to validate the sequence against a clone they order from Don Moerman's group? **There were some wrt CDS and transcript; cell and cell group (no longer an issue), but overall the issue was not that bad.5 KB (816 words) - 16:43, 17 May 2018
- === Alliance pathway working group === === Working on Alliance paralogs ===9 KB (1,369 words) - 22:47, 5 August 2020
- *Kevin is on the AGR Variation working group, WB are ahead in terms of sequence curation and have doing it for years *The group agrees to make it private4 KB (613 words) - 17:56, 16 January 2020
- * What working groups are still meeting? What are their responsibilities? ** Technical working groups5 KB (670 words) - 16:00, 5 August 2021
- === Raymond, Chris and Juancarlos are working on phenotype viewer === * standalone prototyping, commenting and improvements within the group.8 KB (1,220 words) - 16:26, 3 September 2015
- * Monarch group meeting on Thurs - no WB representative ** header and footer working on3 KB (451 words) - 20:13, 21 May 2013
- * Juancarlos has been working on integrating into * Has anyone been working with Anita Bandrowski on this?5 KB (776 words) - 16:50, 7 January 2016
- * Time spent on working groups, conference calls, AGR development * Raymond working on display for paper7 KB (1,010 words) - 17:08, 4 May 2017
- * Working on expression statements for Alliance genes ...discussions about data standards and entities in Alliance Disease Working Group9 KB (1,364 words) - 15:39, 7 February 2019
- === Alliance Literature group === * Working on collecting different use cases on spreadsheet8 KB (1,228 words) - 20:57, 14 July 2020
- * Working group will be formed soon * Working on a pipeline to identify new TransgeneOme strains at each upload6 KB (897 words) - 14:27, 3 October 2019
- == Alliance Literature working group == * Can sign up on the lit group page10 KB (1,547 words) - 21:31, 2 January 2024
- Group primer pairs and oligos -- Working to separate via categories3 KB (423 words) - 18:20, 14 February 2011
- * Marian Walhout working on metabolic flux analysis project * We will create a Phenotype Curation working group which can meet regularly to discuss7 KB (1,079 words) - 19:04, 6 November 2014
- * standalone prototyping, commenting and improvements within the group. Initially, Adam will be working with the Hinxton and OICR teams continuing development on the AceDB -> Dato6 KB (850 words) - 01:12, 22 August 2015
- * AGR disease working group * Wen working on lab meeting presentations; will present AGR progress, give tutorial10 KB (1,586 words) - 15:30, 2 November 2017
- ** Jira - working to consolidate information here. * Gary Williams has been working with Julie to produce graphs using a subset of the modENCODE data.4 KB (708 words) - 16:41, 16 July 2015
- * Working on tables and forms * Chris working with Textpresso to identify ontology terms from paper text for suggestion t5 KB (843 words) - 16:32, 4 December 2014
- ** Karen will be working on more automated curation of transgenes from papers; maybe also for molecu * Sibyl is working on delivering the Expression widget from Datomic10 KB (1,527 words) - 15:32, 6 April 2017
- * Working with Sibyl on the process * Raymond working on addressing warnings and errors (missing definitions, duplicate labels, d7 KB (1,044 words) - 14:45, 8 October 2020
- * Chris still working on ?Phenotype_assay (?Phenotype_experiment/?Phenotype_annotation) class mod * Daniela and Karen have been working on booklet8 KB (1,213 words) - 15:29, 6 July 2017
- ...g should contact FlyBase to make sure they're OK, once he has WormBase SVM working *Karen working on it7 KB (1,064 words) - 19:12, 3 November 2011
- ...m/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?usp=sharing Working data model document] ** SObA? (Raymond); still working on multi-species SObA5 KB (747 words) - 16:31, 5 December 2019
- ...ages at the Alliance (one of the future plans of the disease/pheno working group)3 KB (529 words) - 18:26, 16 July 2020
- * Working out details before sending out to Beta testers ** GO will collaborate with Protein Ontology group to work out how to capture that info6 KB (906 words) - 21:38, 30 September 2015
- ** links we are sending to users not working correctly. ** Parasite has an expert group (people familiar with the resource), who give more detailed feedback on mi5 KB (787 words) - 18:10, 25 August 2022
- * Chris working on patternizing phenotype terms to standardize logical definitions for clas * Juancarlos working on implementing SObA widgets on gene pages (maybe for WS271 or WS272?)6 KB (911 words) - 17:13, 6 June 2019
- *Should we take minutes of Caltech WormBase group meetings and send around? ...ite individuals) if we go around the room to talk about what each of us is working on8 KB (1,282 words) - 17:08, 7 July 2011
- *Working on import pipeline *Nature Publishing Group needs a list of each image that we request permission for6 KB (971 words) - 16:24, 6 October 2011
- ...oblems. We have since received a replacement machine from Illumina that is working much better. We do not plan to re-do PB306, however, until after we have co ...' sp. 11 (JU1373)<br>''Caenorhabditis ''sp. 7 (JU1199)'''<br><br>[Priority Group 2 was:''Caenorhabditis'' sp. 5 (JU727)'', Caenorhabditis sp''. 10 (JU1333),9 KB (1,382 words) - 17:55, 16 August 2010
- *Group phenotypes by e.g. anatomy term, life stage, etc.? *JD working on importing sequence-based data8 KB (1,161 words) - 16:34, 7 March 2013
- * PS - Kevin and Paul K have been working on inviting Euan Birney. * PS - we could present something to the SAB or we could get a special group of experts to advise us at the right time.4 KB (645 words) - 08:57, 27 August 2014
- ...ntly deal with scRNAseq data. Wen says it is possible (regarding each cell group as an experiment). Can try loading the into SPELL. Doe it improve the funct ...Build scripts and WS291 results. After that, he contacted UniProt and he's working with them to figure this out.9 KB (1,375 words) - 16:04, 18 April 2024
- *Same diversity group? ...equal treatment, regardless of where they are in their career, we are also working to assemble lists of potential networking contacts representing various gro10 KB (1,522 words) - 17:27, 10 November 2020
- * Ranjana and Juancarlos working on the concise description form * Working on importing BioGRID genetic interactions, or at least resolving overlap8 KB (1,120 words) - 16:19, 5 March 2015
- * Working group from three sites will test candidate technologies against metrics, consider * Karen will send around a working OBO file8 KB (1,218 words) - 17:46, 2 April 2014
- ==New DAF specs as specified by the AGR Disease Working Group== ...se specifications have been discussed and specified by the Disease Working Group of the AGR10 KB (1,599 words) - 18:53, 24 January 2019
