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- | Molecule||Karen | Transgene||Karen1 KB (200 words) - 17:59, 6 October 2017
- *Karen will collate and print the data type and tools documents for the SAB, deadl *Karen will send e-mail to Sibyl, and Sibyl will print at site of meeting909 bytes (139 words) - 16:20, 5 July 2018
- https://github.com/WormBase/website/issues/5579 reference issue (Karen) * https://github.com/WormBase/website/issues/5579 reference issue (Karen and Sibyl to deal with)2 KB (263 words) - 22:55, 16 May 2017
- * Kevin made discussed creating a few slides; Karen volunteered to create them.342 bytes (44 words) - 15:50, 16 August 2018
- == RRID - Karen and Mary Ann== * Karen does not support their use except maybe for objects which do not have uniqu3 KB (423 words) - 16:35, 7 September 2017
- *Karen Yook944 bytes (115 words) - 14:04, 19 July 2012
- These requirements originate from: [[User:Kyook|Karen Yook]], a CalTech-based WormBase curator. In WS217 Karen's proposed WormBase model for a new Class named 'Molecule' was added to the1 KB (209 words) - 19:57, 25 July 2012
- * Question re: Karen's data; we're waiting for the details1 KB (205 words) - 16:41, 14 October 2009
- == TAGC reports (Karen, Daniella, Todd) == Daniela and Karen are on vacation, reports from us will have to wait until next week.2 KB (353 words) - 17:03, 21 July 2016
- *Karen Yook335 bytes (26 words) - 17:18, 22 February 2011
- |gene cluster||phylogenetic profile clusters||N/A||Karen||none||# gene cluster objects|| ...al interactions||int_ ||Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook||find |Interaction<br>Interaction with Physical<br>Interaction with Ge4 KB (580 words) - 18:13, 6 October 2017
- * Karen set up call with Doug Howe from ZFIN * Karen covered basic overview of WB pages1 KB (234 words) - 16:02, 5 May 2016
- * [Karen] How do I deal with non-elegans gene names that are used in genetics and mi On call: Andres, Dio, Jae, Juancarlos, Karen, Kimberly, Mark, Michael, Paolo, Ranjana, Raymond, Scott, Stavros, Steph, T2 KB (283 words) - 15:52, 3 August 2023
- * micropublications will have a breakfast slot (Daniela / Karen) * will also do a micropublication slot in the WormBase workshop (Daniela / Karen)2 KB (280 words) - 17:48, 1 April 2019
- ===Transgene - Karen===3 KB (475 words) - 14:53, 19 February 2013
- * Molecule model (Karen) * Pathogen tag in #Phenotype_info (Karen & Chris)2 KB (250 words) - 18:47, 5 November 2015
- /home/acedb/karen/WS_upload_scripts/phenotype/use_package.pl*<br> /home/acedb/karen/WS_upload_scripts/paper_object/get_paper_object.pl*5 KB (749 words) - 19:47, 17 May 2018
- ===karen=== I agree with Karen's evaluation of some of the links listed above. Links that are made to tex3 KB (511 words) - 21:07, 1 August 2011
- === Karen's talk at ZFIN === *Doug, Karen, and possible SGD person will spend 10-15 minutes introducing the respectiv4 KB (604 words) - 15:28, 5 May 2016
- * Additional Func: Gene_cluster - Karen Y.704 bytes (104 words) - 12:27, 28 January 2014
- ...allele'''||extvariation||afp, cfp, tfp, jfp||variation NS||old: home/acedb/karen/cur_status_sources/vargene_ref.txt; current:?||for paper-allele connections ...y genetic or other treatment'''|| genereg ||afp, cfp||postgres||home/acedb/karen/cur_status_sources/regulation_ref.txt||6 KB (841 words) - 08:24, 24 October 2014
- * Karen: would be good to still point out a "public name" or "common name" * Karen: Could implement something like Apollo? Talk to Nathan?3 KB (427 words) - 15:32, 1 August 2019
- == IWM (Karen)== == IWM plans (Karen) ==4 KB (624 words) - 17:15, 4 April 2013
- ==== Legacy data incorporation (Variation Phenotype_info) - Karen ==== ==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====5 KB (800 words) - 10:09, 17 February 2012
- Aldrin Montana here next week (Karen) *Talk to Karen if you want to talk to him5 KB (752 words) - 17:07, 7 July 2011
- Karen Yook Karen Yook, PhD5 KB (693 words) - 18:45, 2 February 2017
- Kevin queried the e-mail thread where Karen raised objection to the RRID scheme. Karen explained the rationale for objections; group discussed at length.2 KB (350 words) - 11:50, 6 January 2017
- Overview and status -- Karen '''1435 - 1445''' Process pages -- Karen <br>3 KB (357 words) - 20:30, 6 June 2014
- [PD] Models freeze is tomorrow; working on small molecule model for Karen.995 bytes (143 words) - 16:59, 21 February 2019
- ==== Legacy data incorporation (Variation Phenotype_info) - Karen ==== ==== Re-homing of Rescued_by_Transgene from Variation -> Phenotype_info - Karen ====8 KB (879 words) - 09:32, 3 February 2012
- Karen, Paul Davis, Mary Ann Karen, Lincoln, Raymond4 KB (689 words) - 11:13, 29 August 2013
- Curator: Karen Y. Curator: Karen Y.?2 KB (358 words) - 14:03, 13 January 2014
- ===karen=== Same comments as Karen and Chris3 KB (442 words) - 21:09, 1 August 2011
- From Daniela and Karen: ...onnectivity). To begin Hinxton needs a GFF and IDs. They will check with Karen to see if the data she already has is enough to do this and if not speak wi3 KB (457 words) - 19:24, 7 July 2016
- ===karen=== In bold the things that differ from Karen's comments. it took me 1.5 hour to go through the paper.6 KB (970 words) - 19:52, 2 August 2011
- ...ce tools to submission forms so that authors can generate figures on site. Karen will discuss with Hinxton team about this offline1 KB (165 words) - 18:42, 15 August 2019
- === Dumping data for upload, taking over for Karen === * Karen will take care of dumping and uploading the data for this upload7 KB (1,010 words) - 17:08, 4 May 2017
- // WBProcess class Model - Proposed by Karen Yook WS2252 KB (207 words) - 14:11, 4 March 2011
- ** Magda, Paul D., Karen will meet with Tim to come up with some solutions of gene naming informatio942 bytes (149 words) - 16:13, 5 May 2022
- Karen -1 KB (181 words) - 15:47, 2 November 2017
- :*[[Mac OSX(Leopard)|Mac OSX(Leopard)]] (See Karen)1 KB (190 words) - 20:54, 24 September 2010
- ...orking on it- ky'' xEs12400 Vancouver large-scale strains and trangenes - Karen, Wen ...rowse- needs help from GBrowse Dev, WebTeam or Hinxton?-ky'' Died links - Karen6 KB (1,069 words) - 20:52, 23 July 2013
- ::Karen Yook ::Karen Yook2 KB (306 words) - 15:01, 14 January 2016
- ** Karen: literature curation WG would be interested in having a central name server *** Karen: Yes, doing this for micropublication3 KB (529 words) - 18:26, 16 July 2020
- ...ds like phenotype, paper, object name, phenotype remark (already raised by Karen)--[[User:Jolene|Jolene]] 12:04, 4 April 2008 (EDT) ...e allele or linked gene that differs from current knowledge.--[[User:Karen|Karen]]6 KB (1,053 words) - 20:38, 24 September 2010
- Community Annotation poster (Mary Ann, Karen, Ranjana, Daniela) and presence at booth good Karen - good for tracking emails, threads, can integrate other tools like github3 KB (477 words) - 16:23, 19 March 2015
- * Sent Karen the appropriate code for their collaboration1 KB (205 words) - 16:53, 7 October 2009
- **construct (Karen - responded) **Karen and Paul D. answered - Karen is looking into the construct data7 KB (1,077 words) - 16:26, 20 July 2017
- ====Lanyards (Karen will do)==== * we recently discussed (Karen, Tim, Daniela) if an engineered allele (or an antibody) could be micropubli8 KB (1,231 words) - 22:06, 25 July 2017
- *On call: Adam, Cecilia, Chris, Daniela, Juancarlos, Karen, Kimberly, Paulo, Raymond, Scott, Sibyl, Todd, Valerio, Wen, Kevin, Paul D, **Chris, Daniela, Karen, Ranjana5 KB (816 words) - 16:43, 17 May 2018
- * Karen needs to do some changes for the transgene model.1 KB (201 words) - 19:18, 24 January 2013
- excused: Karen1 KB (213 words) - 16:56, 15 February 2018
- Apologies: Karen (I need to leave 30 minutes into the meeting)1 KB (229 words) - 16:05, 15 July 2021
- **Todd and Karen will take care of this; decision was to contact libraries that take history1 KB (217 words) - 20:07, 17 November 2022
- **Karen made a Google doc, but asked us to hold off on filling out info until she t ...er.com/ Time Glider] app: [http://timeglider.com/timeline/cacc0f6f4491a510 Karen's proposal]4 KB (651 words) - 16:11, 2 May 2013
- === Karen's SBIR grant === * Karen will need to become part time at WormBase (needs to be more than half time10 KB (1,527 words) - 15:32, 6 April 2017
- ** Paul, Wen, Chris, Karen, Daniela, Kimberly, and Scott will go1 KB (229 words) - 16:31, 2 November 2023
- ...working on WBProcess. Mark has seconded back to modencode for 6 months so Karen should now work with Todd or Abby.4 KB (597 words) - 18:34, 31 October 2012
- * On call: Adam, Chris, Daniela, Faye, Jae, Juancarlos, Karen, Kimberly, Magz, Mark, Paulo, Ranjana, Raymond, Scott, Stavros, Todd, Valer2 KB (239 words) - 17:32, 3 December 2020
- - Karen agreed to take the lead on NAR and/or Worm. Everyone agreed (Caltech's turn1 KB (213 words) - 16:30, 21 July 2011
- | Karen ||2/16-3/1|| 7/6-7/192 KB (241 words) - 23:04, 13 August 2010
- added by Karen ...erge information to Transgene Summary or Remark will get the info into WS. Karen will decide if a schema change is necessary.3 KB (534 words) - 17:29, 1 October 2020
- excused: Todd, Karen, Paolo2 KB (213 words) - 18:30, 1 February 2018
- *No objections at Caltech; Karen will send to Paul Davis *Changes to ACE dumping script; Karen will talk to Juancarlos7 KB (1,103 words) - 18:28, 5 May 2011
- // WBProcess class Model - Proposed by Karen Yook WS2253 KB (275 words) - 01:07, 6 February 2014
- *Karen puts in alleles in the name server with paperID, these will be prioritized *Karen enters allele data from papers that come through the GSA markup pipeline be4 KB (613 words) - 17:56, 16 January 2020
- *People from Caltech attending: Karen, Daniela, Michael Müller (Textpresso), Kimberly (going to GO meeting)2 KB (256 words) - 17:36, 4 April 2013
- * Karen: FlyBase chapter has small sections rather than long articles about their p * Karen has made pharyngeal pumping phenotype terms for NemaMetrix micropublication7 KB (1,073 words) - 16:26, 2 March 2017
- * Additional Func: Gene_cluster - Karen Y. Could Karen check her model in the final file....should be ok.4 KB (617 words) - 17:14, 23 January 2014
- ?Transgene - Karen.2 KB (294 words) - 16:14, 16 August 2012
- * Karen & Ranjana raised the [https://github.com/WormBase/website/issues/7985 issue1 KB (205 words) - 17:27, 19 November 2020
- *Question for Karen: What afp tables are populated from the Genetics/G3 pipeline? === Karen and Daniela going to Bay Area meeting ===6 KB (921 words) - 16:52, 4 January 2018
- **Organizers**: King Chow, Ho Yi Mak, Karen Yuen<br> |Karen12 KB (1,663 words) - 16:28, 9 October 2023
- (Karen, Kimberly)<br> 1) The long awaited ?Construct class - Karen15 KB (2,374 words) - 16:00, 17 July 2014
- * From Karen2 KB (227 words) - 15:59, 5 September 2013
- * Karen asked about getting WB IDs for rearrangements (they currently do not get se * Karen, Paul, et al. will setup a call5 KB (857 words) - 14:36, 9 March 2020
- ...ong), Gene interation and overexpression of gene interaction (Chris, Gary, Karen). 0 4 * * * /home/acedb/karen/cronjobs/assign_transgene_IDs.pl9 KB (1,321 words) - 21:59, 3 May 2020
- ...Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook5 KB (352 words) - 17:20, 25 September 2015
- Karen: I don't see any downsides unless companies want to charge us for this serv2 KB (303 words) - 15:59, 4 November 2021
- * Karen handing over to Wen Karen: Where does worm parasite-human disease data go? <br>4 KB (709 words) - 13:27, 5 April 2021
- *** Start sending Transgene report (to Karen)2 KB (279 words) - 17:17, 3 March 2022
- * Karen says it's about little details of research along the lines of Worm Breeder' * Karen is already talking with zfin people about curation comparisons, we will see5 KB (732 words) - 14:46, 29 April 2016
- | Karen. issue is not resolved. This issue needs input from the team - specificall | mary-ann, karen, paul D. will handle this5 KB (719 words) - 16:40, 19 September 2013
- The help desk queue includes Raymond Lee, Scott Cain, Karen Yook, Wen Chen, Mark Quinton-Tulloch, Juancarlos Chan, Cecilia Nakamura, St |Karen Yook42 KB (5,353 words) - 14:28, 7 May 2024
- * ?Gene_cluster - Karen would like to use this underused class for phylogenetic gene clusters * ?Construct Class - Paul D has not spent much time on this. Karen agreed it is not required for WS241.8 KB (1,246 words) - 15:52, 12 November 2013
- ...|/home/postgres/work/citace_upload/cns_construct/use_package.pl<br>|| || ||Karen Yook, Daniela Raciti, Xiaodong Wang|| ...s| model]]||Concise description of gene classes|| || ||Gene <br> Paper|| ||Karen Yook||20 KB (3,050 words) - 21:01, 19 April 2017
- ...y Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Karen Yook, Richard Durbin, Lincoln D. Stein, John Spieth and Paul W. Sternberg ( ...Ann Tuli1, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Karen Yook, Richard Durbin, Lincoln D. Stein, John Spieth and Paul W. Sternberg (6 KB (781 words) - 02:18, 1 April 2012
- *Karen using author first pass list for priority *Karen sent out first draft4 KB (650 words) - 17:08, 1 September 2011
- Contact persons: Karen Yook2 KB (307 words) - 14:04, 7 February 2013
- * Karen: attending impromptu OICR group meeting, won't be on the Caltech call. * EcoCyc, MetaCyc - pathway curation (will hear from Karen)10 KB (1,474 words) - 15:54, 30 April 2014
- ...or want to upload a file instead, contact Karen Yook, Wormbase Curator, at karen@wormbase.org. '''Caltech''' Karen Yook, Hans-Michael Müller, Paul Sternberg. ''Alum'': Arun Rangarajan, Chri17 KB (2,790 words) - 20:50, 10 January 2017
- Caltech: Wen Chen, Xiaodong Wong, Karen Yook, Mary Ann Tuli2 KB (283 words) - 19:20, 11 April 2014
- Request for phenotype_info tag name changes - Karen WBProcess class - Karen/Thomas9 KB (1,431 words) - 23:32, 23 June 2015
- ** Karen & Chris requested legend changes2 KB (273 words) - 14:57, 10 September 2013
- * Karen and Chris will work with Juancarlos on how to handle dead genes in ?Constru * Karen and Mary Ann are curating large numbers of lethal (Let) variations being se4 KB (633 words) - 19:09, 6 January 2015
- * Karen will send around info on Monarch phenopackets * Daniela and Karen have been working on booklet8 KB (1,213 words) - 15:29, 6 July 2017
- * Chris will send corrected models.wrm file to Karen * Karen will send models.wrm to Paul Davis by tomorrow4 KB (622 words) - 16:47, 6 August 2014
- * Karen: Perhaps a question to ask is "what are the main questions they are trying * Curators that use a Textpresso pipeline: Karen, Ranjana, Xiaodong, (Daniela?), Mary Ann6 KB (974 words) - 17:28, 3 September 2014
- Adam, Karen, Kevin, Kimberly, Matt R2 KB (323 words) - 18:24, 15 November 2018
- *WormBase(Pasadena): Karen Yook, Daniela Raciti, Chris Grove, Ranjana Kishore (Dallas), Kimberly Van A2 KB (361 words) - 23:31, 11 January 2011
