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- ...stating ‚"we did RNAi against unc-22" is not enough information for proper curation. We need to unabigiously assign the sequence used in an experiment. In the [[Category:Curation]]530 bytes (85 words) - 18:32, 16 August 2010
- [[Category:Curation]]354 bytes (43 words) - 17:47, 17 August 2010
- [[Category:Curation]]350 bytes (44 words) - 19:41, 10 August 2010
- [[Category:Curation]]1 KB (166 words) - 19:35, 10 August 2010
- =Author Curation=1,002 bytes (141 words) - 23:09, 30 April 2011
- ...y this page should point to a table that is a comprehensive display of the curation status of a given paper as well as a table that can show how far we've come *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi curation status]6 KB (841 words) - 08:24, 24 October 2014
- 10 KB (1,194 words) - 16:35, 13 December 2013
- ===Community Curation=== ...one sort of data type and do not really fall under the remit of Community Curation.1 KB (165 words) - 15:47, 10 April 2015
- = Paper for Curation =7 KB (1,004 words) - 17:50, 13 February 2017
- ...or meeting the hard-code constraints we requested. For variation-phenotype curation, these constraints require that each entry contain a curator, an object typ [[Category:Phenotype Curation]]5 KB (782 words) - 20:35, 24 September 2010
- 1. It appears on the first-pass curation checkout page. The paper is in grey until a pdf or document is available fo ...d for a specific data type is stored in postgres and can be mined from the curation status form [http://wiki.wormbase.org/index.php/New_2012_Curation_Status he3 KB (561 words) - 21:38, 15 August 2013
- [[Category:Phenotype Curation]]9 KB (1,321 words) - 21:59, 3 May 2020
- ==Examples of novel groups of curation issues.==291 bytes (53 words) - 10:19, 21 January 2011
- #REDIRECT [[Noctua model curation tracking table]]50 bytes (6 words) - 20:06, 19 October 2017
- 819 bytes (130 words) - 10:04, 9 November 2010
- =WormBase Curated Data Types and Curation Methods= ...that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''9 KB (1,174 words) - 18:30, 29 August 2012
- Curation Status & Statistics Form (2012) Above is a screenshot of the main page of the Curation Status Form. The user/curator is requested to identify who they wish to log144 KB (18,174 words) - 19:56, 21 January 2021
- = Specifications for Gene - GO Curation Status Form = ...ns protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.3 KB (487 words) - 20:29, 18 March 2019
- Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette Workshop 4 - Big Data Curation, Chaired by Owen White & Francis Ouellette15 KB (2,658 words) - 19:16, 11 April 2014
- 11 KB (1,225 words) - 19:03, 19 March 2018
- *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi Curation status form] has lists, but not completely up-to-date. ! Number of papers flagged manually (from curation status form)5 KB (746 words) - 18:57, 10 August 2010
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- ...plementation using the CCC categories, submit the resulting sentences to a curation form, make annotations, and download the annotations in either a simple thr ...Textpresso using their chosen criteria and export the sentences to the CCC curation form.17 KB (2,749 words) - 20:04, 21 January 2011
- 17 KB (2,104 words) - 22:44, 17 December 2014
- Effective Textpresso searches, and subsequent curation, require the most complete lists of gene and protein names possible. In addition, some types of curation may require matching gene names only, others matching protein names only, o5 KB (857 words) - 23:28, 23 August 2011
Page text matches
- ...want to make researchers aware of the information required for the proper curation of different data sets so they can include this in their publications or pr #[[RNAi curation]]907 bytes (125 words) - 21:27, 19 June 2015
- == AGR Curation Interface Demo == * [https://curation.alliancegenome.org/ Production site]579 bytes (76 words) - 15:42, 16 June 2022
- ==Old phenotype curation pages== #[[Phenote+ Phenotype Curation|Phenote curation tool]]902 bytes (104 words) - 19:51, 20 November 2014
- [[Category:Phenotype Curation]] [[Category:Phenote curation tool]]479 bytes (64 words) - 20:53, 24 September 2010
- ===GO Curation Pipeline at FlyBase=== ==Textpresso for Cellular Component Curation for FlyBase==904 bytes (127 words) - 18:02, 21 July 2011
- ====Topic curation==== *We can then publish important news/topic curation results from the release notes, to the website851 bytes (131 words) - 18:06, 16 October 2014
- ** Gene curation strategies ** Gene curation toools (Web-Apollo)1 KB (175 words) - 10:58, 19 June 2015
- [[Category:Curation]]57 bytes (7 words) - 18:20, 16 August 2010
- [[Category:Curation]]55 bytes (5 words) - 18:44, 11 August 2010
- * Community curation tags134 bytes (16 words) - 11:57, 2 January 2020
- [[Category:Curation]]87 bytes (12 words) - 17:40, 16 August 2010
- #REDIRECT [[Noctua model curation tracking table]]50 bytes (6 words) - 20:06, 19 October 2017
- == 13:30 – 15:30 Sequence curation and analysis, other nematodes == *Curation Tool: Gary Williams ([[Media:9-2008-SAB-Williams.ppt|slides]])2 KB (242 words) - 17:09, 6 January 2011
- [[Category:Curation]]82 bytes (10 words) - 23:22, 13 August 2010
- Based on data curation71 bytes (11 words) - 21:51, 11 May 2011
- '''General specifications for Textpresso-based CCC Curation''' '''Curation'''2 KB (204 words) - 19:18, 17 November 2011
- ...Ms require positive and negative training sets. In the case of first pass curation, this means ..., in part, on the data type. Previous experience with SVMs for first pass curation2 KB (278 words) - 22:31, 16 August 2010
- == Topic curation == == Topic curation ==2 KB (309 words) - 19:45, 5 December 2013
- * Breakdown website to widgets, so that they can be discussed from curation level. Widgets may have different names in each MOD, but they have the same * Besides the google doc for all curation efforts, UMOD also need a technology catalog so that developers know what s2 KB (339 words) - 18:43, 8 April 2016
- 1. Allele curation Need an AGR-friendly curation system1 KB (165 words) - 18:42, 15 August 2019
- **[[First-pass to Curation|Quick summary]] *[[Curation Tasks]]3 KB (325 words) - 17:36, 25 April 2023
- ...stating ‚"we did RNAi against unc-22" is not enough information for proper curation. We need to unabigiously assign the sequence used in an experiment. In the [[Category:Curation]]530 bytes (85 words) - 18:32, 16 August 2010
- * qPCR data curation ...ges for ?Expression_cluster and ?Analysis to accommodate the need for qPCR curation.2 KB (253 words) - 14:58, 13 March 2014
- ...lable, scripts will run to generate and populate the tables needed for the curation form. ...mail alert telling them that there is/is not new source data available for curation.1 KB (201 words) - 20:17, 29 August 2013
- ===Community Curation=== ...one sort of data type and do not really fall under the remit of Community Curation.1 KB (165 words) - 15:47, 10 April 2015
- [[Category:Curation]]184 bytes (28 words) - 18:47, 17 August 2010
- ...sc/wormbase-presentations/2005.11-SAB-CSHL/AP-KVA-RK-2005-SAB-curation.ppt Curation update, Andre Petcherski, Kimberly Van Auken, Ranjana Kishore] ...rmbase-presentations/2005.11-SAB-CSHL/CB-2005-SAB-Phenotypes.ppt Phenotype curation, Carol Bastiani]2 KB (238 words) - 12:04, 20 January 2011
- ...nt (CC) Terms. This index is organized alphabetically and based solely on curation. ...nd annotations to Protein2GO and return a status message at the top of the curation page.3 KB (431 words) - 14:55, 8 July 2014
- ***Monday - dictyBase will identify PDFs for curation ...l process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra2 KB (376 words) - 20:49, 28 June 2012
- ...> identification and automatic extraction of text for <span class="SpellE">curation</span>. <span style="mso-spacerun: yes"></span>In <span class="SpellE">dat ...ch as <span class="SpellE">Phenote</span> for further <span class="SpellE">curation</span>.<span style="mso-spacerun: yes"></span>4 KB (573 words) - 23:46, 13 August 2010
- == Brugia - update on annotation and curation effort == MP - Outlined protocol developed at Hinxton for curation of Brugia malayi gene models. DB ready for handover to WashU. WashU will lo1 KB (228 words) - 16:54, 6 July 2012
- [[Category:Curation]]174 bytes (26 words) - 23:17, 13 August 2010
- [3] You'll note that curation spans releases. With regards to the week counter, I'm not sure if this was ==== Curation ====2 KB (328 words) - 13:05, 2 June 2014
- #[[Author Curation]] [[Category:Curation]]1 KB (130 words) - 21:21, 15 March 2021
- All papers in the list have the curation flag 'Phenotype2GO' in the paper_editor.cgi [[Category:Curation]]2 KB (313 words) - 18:20, 16 August 2010
- [[Category:Curation]]195 bytes (25 words) - 17:50, 16 August 2010
- '''1030 - 1130''' Sequence curation including all those genomes Sequence Curation in C. elegans and curation tools- Paul Davis3 KB (357 words) - 20:30, 6 June 2014
- [[Category:Phenotype Curation]]313 bytes (41 words) - 20:45, 24 September 2010
- 2) Data integration: The curation tool Wormbase provides to approve the annotations could produce a GAF file.223 bytes (34 words) - 17:30, 19 April 2011
- ...get associations made as quickly as possible (better for users, helps for curation). [[Category:Curation]]986 bytes (140 words) - 19:42, 10 August 2010
- == Phenotype Curation (Ranjana / Chris) ==1 KB (155 words) - 17:01, 19 November 2015
- *manual curation is supposed to start as soon as [[NGASP|NGASP]] predictions for the new ass *EMBL/GenBank submission is supposed to start together with manual curation.2 KB (324 words) - 19:34, 11 August 2010
- == Topic Curation ==1 KB (164 words) - 17:33, 15 January 2015
- == GO-CAM model/pathway curation with orthology data == == Curation program for Summer undergraduate students ==2 KB (303 words) - 18:23, 16 April 2020
- =WormBase Curated Data Types and Curation Methods= ...that this page may be periodically updated as both data types curated, and curation methods used, change and improve.''9 KB (1,174 words) - 18:30, 29 August 2012
- == S. ratti community curation == ...the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?2 KB (373 words) - 17:59, 2 March 2023
- ** We may allow the community to use APOLLO for curation within a year. ** WormBase is one of the few MODs doing sequence-based curation. We need to identify who else is doing this so that we can collaborate. Thi1 KB (229 words) - 16:31, 2 November 2023
- *For example, creating new categories for curation of GO Molecular Function terms related to enzymatic activity by selecting s ...read for another purpose, such as concise descriptions or reference genome curation.3 KB (425 words) - 22:35, 16 August 2010
- [[Category:Curation]]434 bytes (49 words) - 16:49, 5 June 2013
- === Curation === ...e under version control, maintained by a combination of scripts and manual curation3 KB (405 words) - 13:18, 15 January 2016
- [[Category:Curation]]303 bytes (47 words) - 23:22, 13 August 2010
- [[Category:Curation]]317 bytes (48 words) - 18:21, 16 August 2010
- === Strain curation at Caltech ===1 KB (241 words) - 18:19, 7 February 2019
- ::Kimberly Van Auken (interested in how to coordinate with BioGrid curation efforts) == [[Working Group:Curation Priorities|Curation Priorities]] ==2 KB (306 words) - 15:01, 14 January 2016
- [[Category:Curation]]354 bytes (43 words) - 17:47, 17 August 2010
- * KH: Second phase of the migration was the data capture and curation * (discussion about current vs delayed updates of curation databases)1 KB (152 words) - 16:10, 5 April 2018
- [[Category:Curation]]350 bytes (44 words) - 19:41, 10 August 2010
- ...na will discuss how to condense and streamline a presentation on community curation ** We should have a talk about LEGO curation and pathways; Kimberly happy to present4 KB (640 words) - 19:07, 11 February 2016
- [[Category:Curation]]473 bytes (68 words) - 18:50, 10 August 2010
- *dictyBase (Bob) will send Textpresso PMIDs for CCC curation every Monday '''Results File to Curation Tool'''1 KB (205 words) - 17:10, 8 November 2012
- === Sequence curation for phenotypic alleles in papers === ...Oliver Hobert : some published alleles are falling through the cracks for curation; paper mentioned is missing sequence and phenotype3 KB (436 words) - 15:07, 22 July 2019
- * How should we prioritize RNAi versus other gene function curation? === 10:45 - 12:15 Sequence analysis and curation ===4 KB (462 words) - 08:54, 8 October 2014
- [[Category:Phenote curation tool]] [[Category:Phenotype Curation]]1 KB (190 words) - 20:54, 24 September 2010
- == Allele / variation curation == ==Allele curation==4 KB (613 words) - 17:56, 16 January 2020
- ...ration is underway, but Noctua is still under beta testing. Noctua is a GO curation tool that “allows curators to connect together multiple annotations to gi3 KB (457 words) - 19:24, 7 July 2016
- ** 09.45 Caenorhabditis sequence curation - Gary Williams ** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli3 KB (438 words) - 07:19, 6 October 2014
- [[Category:Curation]]437 bytes (67 words) - 18:57, 16 August 2010
- As said before we are currently running Variation curation (molecular details) in a maintenence mode where -Can we make an easy to use curation tool/submission form? Mary Ann made one. It's available and easy to extract3 KB (441 words) - 17:15, 1 August 2019
- *Discussion of what features are commonly used in the curation status form252 bytes (35 words) - 17:49, 12 May 2022
- * WashU sequence curation hand over to Hinxton: stlace is now taken over by Hinxton. All C. elegans c * Progress report: Caltech can dump out curation status info from postgres database. We can also do comparision from release2 KB (232 words) - 09:58, 2 August 2013
- [[Category:Curation]]640 bytes (97 words) - 22:32, 16 August 2010
- * Aim 2. Gene-centric curation. None of the paragraphs mention any work or plan for migrating that data cl * Aim 4 now lists worm-specific curation and tools we want to continue to support, outside Alliance2 KB (326 words) - 16:00, 8 September 2022
- #[[Clone CCC curation form for dictyBase - Juancarlos, Kimberly]] #[[dicty curation - Petra, Kimberly]]3 KB (439 words) - 21:25, 6 November 2012
- curation best practices are widespread or saving much curation time when they do participate3 KB (564 words) - 19:15, 10 August 2010
- ==Examples of novel groups of curation issues.==291 bytes (53 words) - 10:19, 21 January 2011
- *How do we assign new strain IDs at the point of curation? ...ID already exists; if not, can request a new strain ID to use in postgres curation database.5 KB (816 words) - 16:43, 17 May 2018
- [[Category:Curation]]372 bytes (60 words) - 20:54, 10 August 2010
- ...e is an idea to make the human disease data more accessible and extend the curation. Discussion items: * Curation3 KB (450 words) - 16:07, 7 August 2014
- ...mber), should we be creating new papers at the alliance first or in the WB curation database and then importing them in. ...WB to Alliance. Paper approval and acquisition are the first steps in our curation process and we should make sure we've got a good plan in place before we ma1 KB (229 words) - 16:05, 15 July 2021
- == Themed Curation == = Curation Focus ideas for themed releases =2 KB (361 words) - 16:32, 17 October 2013
- [[Category:Curation]]608 bytes (98 words) - 18:31, 11 August 2010
- == Sequence Curation == ...base.org/group/caltech/topics topics]; The literature and large-scale data curation team at the California Institute of Technology.5 KB (757 words) - 01:45, 2 June 2014
- This project is broken down into three main sections: central database, curation, and website. ...gies to work with the new database system: Hinxton Curration tool, CalTech curation tool and Datomic API's for the website (Catalyst)5 KB (842 words) - 19:41, 17 February 2016
- ...y this page should point to a table that is a comprehensive display of the curation status of a given paper as well as a table that can show how far we've come *[http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi curation status]6 KB (841 words) - 08:24, 24 October 2014
- In the context of first pass curation, SVMs are used to classify documents with respect to the type of data they770 bytes (117 words) - 13:08, 20 November 2009
- ...some paper types from the searches would more accurately reflect the real curation pipeline. [[Category:Curation]]2 KB (259 words) - 18:08, 16 August 2010
- Phenotype curation at WormBase entails the assignment of a phenotype term from the ''C. elegan ===Sources for allele phenotype curation===7 KB (1,148 words) - 23:02, 23 October 2014
- [[Category:Curation]]653 bytes (82 words) - 19:01, 10 August 2010
- == Genetomic / curation database ==2 KB (296 words) - 01:51, 5 September 2015
- Searches would return sentences, one page on the curation form per paper, if possible? ==Curation Workflows==5 KB (764 words) - 21:17, 18 March 2013
- 1. It appears on the first-pass curation checkout page. The paper is in grey until a pdf or document is available fo ...d for a specific data type is stored in postgres and can be mined from the curation status form [http://wiki.wormbase.org/index.php/New_2012_Curation_Status he3 KB (561 words) - 21:38, 15 August 2013
- [[First-pass to Curation]]<br> ...~postgres/cgi-bin/curator_first_pass.cgi Example of new curator first-pass curation.cgi]2 KB (241 words) - 23:04, 13 August 2010
- ** similar problem to redundancy during GO curation * different approaches between the databases for curation/prediction2 KB (213 words) - 18:30, 1 February 2018
- **3e i. Data Curation ***Does the resource provide documentation of the data curation process/deposition workflow? Please describe, with a url link to public doc2 KB (233 words) - 15:30, 21 July 2022
- ...nd Chris joined a Teaching Curation workshop to teach undergraduates about curation. Chris is currently processing the student submissions to remove redundanci ===WormBase Paper Curation charge===3 KB (525 words) - 17:20, 4 April 2024
- === LEGO Curation === * Curation Stats numbers spreadsheet6 KB (857 words) - 16:01, 2 October 2014
- [[Category:Curation]]271 bytes (29 words) - 22:34, 11 August 2010
- ...nformation we need for curation and search and retrieval functions for the curation form.2 KB (261 words) - 17:08, 16 April 2013
- ...ng that we have been thinking of how to rationalise is the TierI / Tier II curation split.''' '''PS - We should approach curation de novo and forget the history'''3 KB (564 words) - 17:27, 20 December 2012
- *Chris' will present flagging and curation pipeline overview *GO curation pipeline3 KB (349 words) - 19:25, 18 January 2013
