Difference between revisions of "Project meeting agendas and minutes"
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− | '''1600 - 1645''' Database issues (Ant) | + | '''1600 - 1645''' Database issues (Ant / mh) |
− | * Brief build overview | + | * Brief build overview (Ant) |
- Data aggregation | - Data aggregation | ||
- Mapping and cross reference creation | - Mapping and cross reference creation | ||
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- Tier III builds | - Tier III builds | ||
- Web database builds | - Web database builds | ||
+ | * comparative genomics (mh) | ||
+ | + ensembl | ||
+ | + sanger mirror | ||
Revision as of 11:12, 8 January 2010
January 2010 Advisory Board Meeting, Caltech
Advisors Attending: Tim Schedl, Mark Blaxter, Bill Gelbart, Mike Cherry, Robin Gasser Special Guests: Makedonka Mitreva
Sunday, January 10th Sanger arrive LAX 19:15 -> Ath ??21:15ish??
Monday, January 11 (Broad Ctr rm200[1]
0900 - 0915 Introduction and Charge to Advisors --Paul Sternberg
0915 - 1015 Website
Todd:
- Usage
- Staffing
- Project management metrics & help desk enhancements
- OICR migration
- Frozen releases
- Redesign preview
1030 - 1130 Sequence curation including all those genomes
Sequence Curation C. elegans - Paul Sequence Curation Tier II - RNAseq (RGASP) - Gary
1130 - 1200 Sequence display
1200 - 1300 Lunch
1300 - 1400 Literature curation
progress --Karen plans and automation -- Kimberly, Ruihua author input GSA/ automating linking --Arun Phenotype curation and ontology -- Jolene, Gary Strains, alleles, sequence features etc Mary Ann - Ant
1400 - 1438 Cell pages, Process pages, Interaction pages - OICR, Raymond
- Cell anatomy function curation
- Cell lineage information
- Cell neural connectivity
- Cell link in/out
1438 - 1445 Process pages -- Karen
1445 - 1500 Nematode.net -- Makedonka
1500 - 1600 Large-scale datasets -
- microarrays & SPELL - Wen
- modENCODE - Lincoln
- non-modENCODE ChIP-seq and RNA-seq data
- C.elegans strain resequencing (what should we do?) - Ant
lineageing and gene expression (Burglin, Waterston) -Raymond
1600 - 1645 Database issues (Ant / mh)
* Brief build overview (Ant) - Data aggregation - Mapping and cross reference creation - Similarity searches / orthology / synteny etc (mh to expand) : ensembl based stuff - Tier II builds (basically the same) - Tier III builds - Web database builds * comparative genomics (mh) + ensembl + sanger mirror
1645 - 1700 Static pages and downloads
1700 - 1800 Overall Prioritization --Paul Sternberg
1800 Dinner
Tuesday January 11
0900 - 1200 Report and discussion with Advisors
Not sure where to put this, but don't want to forget to bring this up. How should WormBase handle meeting abstracts (other than the International meeting)? What meetings/abstracts should be included in WB? Should WormBase provide a submission form for topical and regional meetings to facilitate handling abstracts?
Frequency of frozen releases.
'Tuesday afternoon and Wednesday Project Meeting'
Gene Pages
content and display
Breakout sessions with curators and web-dev team members to discuss specific data types and pages