Difference between revisions of "Nematode sequencing summary"
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{| cellspacing="1" cellpadding="1" border="1" width="100%" | {| cellspacing="1" cellpadding="1" border="1" width="100%" | ||
|+ Nematode Sequencing Status | |+ Nematode Sequencing Status | ||
− | |- | + | |- style="background:burlywood" |
| '''Species'''<br> | | '''Species'''<br> | ||
| '''Status'''<br> | | '''Status'''<br> | ||
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| 9.5x draft, initial gene calls<br> | | 9.5x draft, initial gene calls<br> | ||
| 191 Mb in 3510 supercontigs<br> | | 191 Mb in 3510 supercontigs<br> | ||
− | | 30,557 (Jigsaw)<br> | + | | 30,557 (Jigsaw)<br> |
| [ftp://ftp.wormbase.org/pub/wormbase/genomes/brenneri/ WormBase]<br> | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/brenneri/ WormBase]<br> | ||
| [http://www.wormbase.org/db/seq/gbrowse/brenneri/ WormBase]<br> | | [http://www.wormbase.org/db/seq/gbrowse/brenneri/ WormBase]<br> | ||
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| [http://www.wormbase.org/db/seq/gbrowse/brugia/ WormBase]<br> | | [http://www.wormbase.org/db/seq/gbrowse/brugia/ WormBase]<br> | ||
|- | |- | ||
− | | ''Heterorhabditis''<br> | + | | ''Heterorhabditis''<br> |
− | | * in progress *<br> | + | | * in progress *<br> |
− | | <br> | + | | <br> |
− | | <br> | + | | <br> |
− | | <br> | + | | <br> |
| <br> | | <br> | ||
|- | |- | ||
− | | ''T. spiralis''<br> | + | | ''T. spiralis''<br> |
− | | * in progress *<br> | + | | * in progress *<br> |
− | | <br> | + | | <br> |
− | | <br> | + | | <br> |
− | | <br> | + | | <br> |
| <br> | | <br> | ||
|} | |} | ||
<br> | <br> |
Revision as of 19:25, 13 June 2008
This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.
Last update: 13 June 2008
Species |
Status |
Assembly size |
'G'ene count (method) |
Download |
Browser |
C. elegans |
finished; Annotated |
101 Mb in 6 chromosomes |
20,177 (curated) |
WormBase |
WormBase |
C. briggsae |
10x draft; Annotated |
101 Mb in 6 chromosomes, 7 Mb unassigned |
21,558 (Jigsaw) |
WormBase |
WormBase |
C. brenneri | 9.5x draft, initial gene calls |
191 Mb in 3510 supercontigs |
30,557 (Jigsaw) |
WormBase |
WormBase |
C. japonica | 6.3x draft, initial gene calls |
152 Mb in 4657 supercontigs |
15,191 (MGENE) |
WormBase |
WormBase |
C. remanei | 9.2x draft, initial gene calls |
145 Mb in 3670 supercontigs |
31,641 (Jigsaw) |
WormBase |
WormBase |
P. pacificus | 8.9x draft, initial gene calls |
169 Mb in 5106 supercontigs |
29,201 (SNAP) |
WashU |
www.pristionchus.org |
B. malayi | 8.9x draft, genes annotated |
72 Mb in 3114 supercontigs |
18,561 (Augustus) |
WormBase |
WormBase |
Heterorhabditis |
* in progress * |
||||
T. spiralis |
* in progress * |