Difference between revisions of "Molecule model build"
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[[Example molecule pages]]<br> | [[Example molecule pages]]<br> | ||
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This model addresses the small_molecule class, or part of it, that was discussed in the 2007 WB grant.<br> | This model addresses the small_molecule class, or part of it, that was discussed in the 2007 WB grant.<br> | ||
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///////////////////////////small molecule/chemical/drug //////////////////////////// | ///////////////////////////small molecule/chemical/drug //////////////////////////// | ||
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DB_info Database ?Database ?Database_field ?Accession_number | DB_info Database ?Database ?Database_field ?Accession_number | ||
Gene_regulation Gene_regulator ?Gene_regulation XREF Molecule_regulator | Gene_regulation Gene_regulator ?Gene_regulation XREF Molecule_regulator | ||
− | Affects_phenotype_of Variation ?Variation | + | Affects_phenotype_of Variation ?Variation #Evidence |
− | Strain ?Strain | + | Strain ?Strain #Evidence |
− | Transgene ?Transgene | + | Transgene ?Transgene #Evidence |
− | RNAi ?RNAi | + | RNAi ?RNAi #Evidence |
/////////////////////////////////////////////////////////////////////////////////// | /////////////////////////////////////////////////////////////////////////////////// | ||
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* Synonym -> other names, how do we mine these from other DBs? | * Synonym -> other names, how do we mine these from other DBs? | ||
* DB_info -> links to entity in other database add following databases to database.ace | * DB_info -> links to entity in other database add following databases to database.ace | ||
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Revision as of 00:54, 1 July 2010
links to relevant pages
Caltech documentation
Overview of molecule pages
Example molecule pages
Approved model
This model addresses the small_molecule class, or part of it, that was discussed in the 2007 WB grant.
///////////////////////////small molecule/chemical/drug //////////////////////////// // // ?Molecule // * metabolites: precursors, intermediates, or end products of a metabolic pathway // * monomeric or very small oligomeric nucleic acids (not RNAi primers), e.g. ATP, ADP, cAMP, GTP, trinucleotide repeats?? // * chemicals/drugs // * minerals, ions, salts // //////////////////////////////////////////////////////////////////////////////////// ?Molecule Name ?Text Public_name ?Text Synonym ?Text DB_info Database ?Database ?Database_field ?Accession_number Gene_regulation Gene_regulator ?Gene_regulation XREF Molecule_regulator Affects_phenotype_of Variation ?Variation #Evidence Strain ?Strain #Evidence Transgene ?Transgene #Evidence RNAi ?RNAi #Evidence ///////////////////////////////////////////////////////////////////////////////////
Corresponding changes in touched models
///// ?Phenotype_info Affected_by Molecule ?Molecule #Evidence /////
///// ?Gene_regulation Regulator Molecule_regulator ?Molecule XREF Gene_regulator #Boolean /////
Model elements
- Name-> WBMolID
- Public name -> common name in elegans literature
- Synonym -> other names, how do we mine these from other DBs?
- DB_info -> links to entity in other database add following databases to database.ace