Model changes to capture and consolidate human disease data
From WormBaseWiki
Jump to navigationJump to searchA new tag ‘Human_disease_info’ proposed to consolidate disease-related data in WormBase:
?Gene DB_info Database ?Database ?Database_field Text Disease_info Experimental_model_for_human ?DO_term XREF Gene_by_biology #Evidence Potential_model_for_human ?DO_term XREF Gene_by_orthology #Evidence Human_disease_relevance ?Text #Evidence //moved from ‘structured description’ tag, note name change from 'Human_disease_relevance' to 'Disease_relevance'
Model for Disease Ontology Term:
?DO_term Name ?Text Status UNIQUE Valid Obsolete Alternate_id ?Text Definition ?Text Comment Text Synonymn ?Text Scope_modifier UNIQUE Broad Exact Narrow Related Relationships is_a DB_info Database ?Database ?Database_field Text Replaced_by ?DO_term Subset Text Created_by Text Creation_date Text Attribute_of Gene_by_biology ?Gene XREF DO_term Gene_by_orthology ?Gene XREF DO_term Phenotype ?Phenotype XREF DO_term WBProcess ?WBProcess XREF DO_term Index Ancestor ?DO_term //Consider transitivity, needed for web display? Descendent ?DO_term //Consider transitivity, needed for web display? Version UNIQUE Text //revision number
The Disease Ontology terms reference other resources/databases, these are the ones we may want to include:
- MeSH (Medical Subject Headings), US National Library of Medicine, http://www.nlm.nih.gov/mesh
Example ID--MSH:D004427 which should link to http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi