Difference between revisions of "Model changes to capture and consolidate human disease data"
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Jump to navigationJump to searchLine 2: | Line 2: | ||
?Gene | ?Gene | ||
− | + | DB_info Database ?Database ?Database_field Text | |
− | + | Disease_info Experimental_model_for ?DO_term XREF Gene #Evidence | |
− | + | Potential_model_for ?DO_term XREF Gene #Evidence | |
− | + | Disease_relevance ?Text #Evidence //moved from ‘structured description’ tag, note name change from 'Human_disease_relevance' to 'Disease_relevance' | |
Line 18: | Line 18: | ||
Comment Text | Comment Text | ||
Synonymn ?Text Scope_modifier UNIQUE Broad | Synonymn ?Text Scope_modifier UNIQUE Broad | ||
+ | Exact | ||
+ | Narrow | ||
+ | Related | ||
Relationships is_a | Relationships is_a | ||
− | DB_info Database ?Database ?Database_field | + | DB_info Database ?Database ?Database_field Text |
Replaced_by ?DO_term | Replaced_by ?DO_term | ||
Subset Text | Subset Text | ||
Line 27: | Line 30: | ||
?Phenotype XREF DO_term | ?Phenotype XREF DO_term | ||
?WBProcess XREF DO_term | ?WBProcess XREF DO_term | ||
− | Index Ancestor ? | + | Index Ancestor ?DO_term //Consider transitivity, needed for web display? |
− | Descendent ? | + | Descendent ?DO_term //Consider transitivity, needed for web display? |
Version UNIQUE Text //revision number | Version UNIQUE Text //revision number |
Revision as of 18:34, 26 November 2012
A new tag ‘Human_disease_info’ proposed to consolidate disease-related data in WormBase:
?Gene DB_info Database ?Database ?Database_field Text Disease_info Experimental_model_for ?DO_term XREF Gene #Evidence Potential_model_for ?DO_term XREF Gene #Evidence Disease_relevance ?Text #Evidence //moved from ‘structured description’ tag, note name change from 'Human_disease_relevance' to 'Disease_relevance'
Model for Disease Ontology Term:
?DO_term Name ?Text Status UNIQUE Valid Obsolete Alternate_id ?Text Definition ?Text Comment Text Synonymn ?Text Scope_modifier UNIQUE Broad Exact Narrow Related Relationships is_a DB_info Database ?Database ?Database_field Text Replaced_by ?DO_term Subset Text Created_by Text Creation_date Text Attribute_of ?Gene XREF DO_term ?Phenotype XREF DO_term ?WBProcess XREF DO_term Index Ancestor ?DO_term //Consider transitivity, needed for web display? Descendent ?DO_term //Consider transitivity, needed for web display? Version UNIQUE Text //revision number