June 2012 - Weekly Pipeline Set-up

Goal: To set up a weekly CCC pipeline for dictyBase.

• Proposed workflow from Petra
  • On a weekly basis:
    • Monday - dictyBase will identify PDFs for curation
    • Tuesday - Textpresso will process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra
    • CCC curation performed by dictyBase curators will be stored on tazendra and exported to protein2go database at EBI (UniProt-GOA)

• Outstanding issues
  • dicty gene names
    • known issues: 'myosin' vs 'myosin IE'