Difference between revisions of "June 2012 - Weekly Pipeline Set-up"
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***Monday - dictyBase will identify PDFs for curation | ***Monday - dictyBase will identify PDFs for curation | ||
***Tuesday - Textpresso will process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra | ***Tuesday - Textpresso will process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra | ||
| − | ***CCC curation performed by dictyBase curators will be stored on tazendra and exported to protein2go | + | ***CCC curation performed by dictyBase curators will be stored on tazendra and exported to protein2go database at EBI (UniProt-GOA) |
| + | |||
| + | *Outstanding issues | ||
| + | **dicty gene names | ||
| + | ***known issues: 'myosin' vs 'myosin IE' | ||
Revision as of 15:50, 26 June 2012
Goal: To set up a weekly CCC pipeline for dictyBase.
- Proposed workflow from Petra
- On a weekly basis:
- Monday - dictyBase will identify PDFs for curation
- Tuesday - Textpresso will process new PDFs, perform CCC search, and send source file output to CCC curation form on tazendra
- CCC curation performed by dictyBase curators will be stored on tazendra and exported to protein2go database at EBI (UniProt-GOA)
- On a weekly basis:
- Outstanding issues
- dicty gene names
- known issues: 'myosin' vs 'myosin IE'
- dicty gene names
