Difference between revisions of "Jenkins Checks"

From WormBaseWiki
Jump to navigationJump to search
 
(27 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
Action Items for Jenkins Validation Checks
 
Action Items for Jenkins Validation Checks
  
−
# GO_AR:0000014 Valid GO term ID Error count: 1
+
'''2014-10-09'''
  
−
130637 GO_AR:0000014 Error The id 'GO:0006371' in the annotation is an obsolete class WB WBGene00006423 asd-2 GO:0006371 WB_REF:WBPaper00040713|PMID:22285439 IMP WB:WBRNAi00091841|WBPhenotype:0001834 P T21G5.5 gene taxon:6239 20130516 WB
+
GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 269
  
−
    Check annotations to WBPhenotype:0001834
+
# Ranjana
−
    How many? 
+
#* sca-1 - embryo development - 3 isoforms
−
    How many are covered by more granular manual annotations?
+
#* atl-1 - embryo development - 2 isoforms
−
    Downgrade mapping to less granular term, e.g. GO:0006397 mRNA processing ?
+
#* crn-3 - embryo development - 2 isoforms
 +
#* klp-16 - embryo development - 1 isoform
 +
#* dlg-1 - embryo development - 2 isoforms
 +
#* drp-1 - embryo development - 1 isoform (other isoform was fixed previously)
 +
#* vab-2 - embryo development - 1 isoform (G5EEE7)
 +
#* pos-1 - embryo development - 1 isoform
 +
# Carol
 +
#* gpb-1 - embryo development - 2 isoforms - FIXED
 +
#* exo-3 - embryo development - 2 isoforms - FIXED
 +
#* nmy-2 - embryo development - 2 isoforms - FIXED ( note that only one isoform had the annotation)
 +
#* vha-4 - embryo development - 1 isoform - FIXED
 +
# Kimberly
 +
#* lin-52 - embryo development - 2 isoforms - FIXED
 +
#* vab-19 - embryo development - 1 isoform - CAN'T FIX UNTIL MULTI-VALUE WITH STRINGS ARE ALLOWED FOR IMP
 +
#* alg-1 - embryo development - 3 isoforms (only two had the annotation) - FIXED
 +
# Duncan (UniProtKB)
 +
#* zyg-9 - embryo development - 1 isoform

Latest revision as of 15:45, 9 October 2014

Action Items for Jenkins Validation Checks

2014-10-09

GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 269

  1. Ranjana
    • sca-1 - embryo development - 3 isoforms
    • atl-1 - embryo development - 2 isoforms
    • crn-3 - embryo development - 2 isoforms
    • klp-16 - embryo development - 1 isoform
    • dlg-1 - embryo development - 2 isoforms
    • drp-1 - embryo development - 1 isoform (other isoform was fixed previously)
    • vab-2 - embryo development - 1 isoform (G5EEE7)
    • pos-1 - embryo development - 1 isoform
  2. Carol
    • gpb-1 - embryo development - 2 isoforms - FIXED
    • exo-3 - embryo development - 2 isoforms - FIXED
    • nmy-2 - embryo development - 2 isoforms - FIXED ( note that only one isoform had the annotation)
    • vha-4 - embryo development - 1 isoform - FIXED
  3. Kimberly
    • lin-52 - embryo development - 2 isoforms - FIXED
    • vab-19 - embryo development - 1 isoform - CAN'T FIX UNTIL MULTI-VALUE WITH STRINGS ARE ALLOWED FOR IMP
    • alg-1 - embryo development - 3 isoforms (only two had the annotation) - FIXED
  4. Duncan (UniProtKB)
    • zyg-9 - embryo development - 1 isoform
Retrieved from "https://wiki.wormbase.org/index.php?title=Jenkins_Checks&oldid=25072"