Difference between revisions of "How are the repeats determined?"
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Repeats are determined in several ways. | Repeats are determined in several ways. | ||
− | <br> | + | *1) [[http://www.repeatmasker.org RepeatMasker]]<br> |
− | There are RepeatMasker libraries available for ''C.elegans ''and''C.briggsae'' are available from the [[http://www.sanger.ac.uk/Projects/C_elegans/REPEATS/ | + | There are RepeatMasker libraries available for ''C.elegans ''and''C.briggsae'' are available from the [[http://www.sanger.ac.uk/Projects/C_elegans/REPEATS/ Sanger Institute pages]]. These pages also have some description of the motifs identified.<br> |
+ | |||
+ | *2) [[http://tandem.bu.edu/trf/trf.html Tandem Repeat Finder.]] by G. Benson | ||
+ | |||
+ | *3) <span style="font-weight: bold;"></span>[[http://www.ncbi.nlm.nih.gov/pubmed/7514951?dopt=Abstract dust]]a low-complexity filter for nucleotide sequences<br> |
Revision as of 09:07, 17 June 2008
Repeats are determined in several ways.
- 1) [RepeatMasker]
There are RepeatMasker libraries available for C.elegans andC.briggsae are available from the [Sanger Institute pages]. These pages also have some description of the motifs identified.
- 2) [Tandem Repeat Finder.] by G. Benson
- 3) [dust]a low-complexity filter for nucleotide sequences