How WormBase writes a concise description
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Revision as of 22:44, 1 April 2013 by Rkishore (talk | contribs) (→Writing a concise description for a C. elegans gene)
Writing a concise description for a C. elegans gene
Key facts captured in a concise description:
- Molecular identity
- Orthology
- Process/Pathway
- Genetic interactions
- Physical interactions
- Function/Molecular Activity
- Tissue Expression
- Sub cellular localization
Molecular identity <Gene> encodes .....;
Orthology/Similarity <Gene> is (drop down with values:orthologous,similar) to .....;
Process/Pathway <Gene> is (drop-down with values: required,functions,regulates,is involved in,is part of) .....; (Sentence needs to be cloned if required)
Genetic interaction with respect to Process or Pathway <Gene> interacts genetically with (drop-down with ontology:WBGenes) with respect to ........; Physical interaction <Protein> physically interacts (drop-down with values: invitro, invivo) with (drop-down with proteins);
Molecular Function <Protein> has (drop down with ontology:GO molecular function) or ……… activity;
Tissue Expression <Gene/Protein> is expressed in …………and expression in ......is (drop-down with values: positively, negatively) regulated by .......;
Cellular Component/sub-cellular localization <Protein> is localized to (drop-down with ontology:GO cellular component) or .......and expression in .....is (drop-down with values: positively, negatively) regulated by (drop-down with proteins)