Difference between revisions of "How WormBase writes a concise description"
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<Gene> encodes .....; | <Gene> encodes .....; | ||
'''Orthology/Similarity''' | '''Orthology/Similarity''' | ||
− | <Gene> is to .....; | + | <Gene> is <orthologous, similar) to .....; |
'''Process/Pathway''' | '''Process/Pathway''' | ||
− | <Gene> is <required,functions,regulates,is involved in,is part of> .....; | + | <Gene> is <required, functions, regulates, is involved in, is part of> .....; |
'''Genetic interaction with respect to Process or Pathway''' | '''Genetic interaction with respect to Process or Pathway''' | ||
− | <Gene> interacts genetically with | + | <Gene> interacts genetically with ..... in <Process, Pathway>; |
'''Physical interaction''' | '''Physical interaction''' | ||
<Protein> physically interacts <invitro, invivo> with .......; | <Protein> physically interacts <invitro, invivo> with .......; | ||
'''Molecular Function''' | '''Molecular Function''' | ||
− | <Protein> has or ……… | + | <Protein> has or ……… activity in <in vitro, in vivo> assays; |
'''Tissue Expression''' | '''Tissue Expression''' | ||
<Gene/Protein> is expressed in …………and expression in ......is (positively, negatively) | <Gene/Protein> is expressed in …………and expression in ......is (positively, negatively) |
Revision as of 22:56, 1 April 2013
Writing a concise description for a C. elegans gene
Key facts captured in a concise description:
- Molecular identity
- Orthology
- Process/Pathway
- Genetic interactions
- Physical interactions
- Function/Molecular Activity
- Tissue Expression
- Sub cellular localization
Molecular identity <Gene> encodes .....; Orthology/Similarity <Gene> is <orthologous, similar) to .....; Process/Pathway <Gene> is <required, functions, regulates, is involved in, is part of> .....; Genetic interaction with respect to Process or Pathway <Gene> interacts genetically with ..... in <Process, Pathway>; Physical interaction <Protein> physically interacts <invitro, invivo> with .......; Molecular Function <Protein> has or ……… activity in <in vitro, in vivo> assays; Tissue Expression <Gene/Protein> is expressed in …………and expression in ......is (positively, negatively) regulated by .......; Cellular Component/sub-cellular localization <Protein> is localized to <sub-cellular component> or .......and expression in <sub-cellular component> is <positively, negatively> regulated by ........