Difference between revisions of "How WormBase writes a concise description"
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− | Molecular identity | + | '''Molecular identity''' |
<Gene> encodes .....; | <Gene> encodes .....; | ||
− | Orthology/Similarity | + | '''Orthology/Similarity''' |
− | <Gene> is | + | <Gene> is to .....; |
− | Process/Pathway | + | '''Process/Pathway''' |
− | <Gene> is | + | <Gene> is <required,functions,regulates,is involved in,is part of> .....; |
− | + | '''Genetic interaction with respect to Process or Pathway''' | |
− | + | <Gene> interacts genetically with respect to ........; | |
− | + | '''Physical interaction''' | |
− | <Gene> interacts genetically with | + | <Protein> physically interacts <invitro, invivo> with .......; |
− | + | '''Molecular Function''' | |
− | Physical interaction | + | <Protein> has or ……… activity; |
− | <Protein> physically interacts | + | '''Tissue Expression''' |
− | + | <Gene/Protein> is expressed in …………and expression in ......is (positively, negatively) | |
− | Molecular Function | + | regulated by .......; |
− | <Protein> has | + | '''Cellular Component/sub-cellular localization''' |
− | Tissue Expression | + | <Protein> is localized to <sub-cellular component> or .......and expression in |
− | <Gene/Protein> is expressed in …………and expression in ......is ( | + | <sub-cellular component> is <positively, negatively> regulated by ........ |
− | |||
− | Cellular Component/sub-cellular localization | ||
− | <Protein> is localized to | ||
− | |||
− | positively, negatively |
Revision as of 22:52, 1 April 2013
Writing a concise description for a C. elegans gene
Key facts captured in a concise description:
- Molecular identity
- Orthology
- Process/Pathway
- Genetic interactions
- Physical interactions
- Function/Molecular Activity
- Tissue Expression
- Sub cellular localization
Molecular identity <Gene> encodes .....; Orthology/Similarity <Gene> is to .....; Process/Pathway <Gene> is <required,functions,regulates,is involved in,is part of> .....; Genetic interaction with respect to Process or Pathway <Gene> interacts genetically with respect to ........; Physical interaction <Protein> physically interacts <invitro, invivo> with .......; Molecular Function <Protein> has or ……… activity; Tissue Expression <Gene/Protein> is expressed in …………and expression in ......is (positively, negatively) regulated by .......; Cellular Component/sub-cellular localization <Protein> is localized to <sub-cellular component> or .......and expression in <sub-cellular component> is <positively, negatively> regulated by ........