Difference between revisions of "General specifications"
| Line 3: | Line 3: | ||
'''Input''' | '''Input''' | ||
| + | |||
location of files on Textpresso for retrieving paper titles and abstracts | location of files on Textpresso for retrieving paper titles and abstracts | ||
Revision as of 18:36, 17 November 2011
General specifications for Textpresso-based CCC Curation
Input
location of files on Textpresso for retrieving paper titles and abstracts
Arabidopsis: /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/
source files for curatable sentences - supplied by Textpresso team
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
Curation
web-based curation form
Arabidopsis: http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg
postgres table for storing curation
Arabidopsis: ccc_tair_gene_comp_go
Output - three-column or GAF
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
taxon ID
Arabidopsis:
