Difference between revisions of "General specifications"
| Line 6: | Line 6: | ||
location of files on Textpresso for retrieving paper titles and abstracts | location of files on Textpresso for retrieving paper titles and abstracts | ||
| − | ''Arabidopsis'': | + | ''Arabidopsis'': /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/ |
source files for curatable sentences | source files for curatable sentences | ||
gene name to gene identifier mapping file | gene name to gene identifier mapping file | ||
| + | |||
| + | ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles | ||
| Line 16: | Line 18: | ||
web-based curation form | web-based curation form | ||
| + | |||
| + | ''Arabidopsis'': http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg | ||
postgres table for storing curation | postgres table for storing curation | ||
| + | |||
| + | ''Arabidopsis'': ccc_tair_gene_comp_go | ||
| Line 23: | Line 29: | ||
gene name to gene identifier mapping file | gene name to gene identifier mapping file | ||
| + | |||
| + | ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles | ||
taxon ID | taxon ID | ||
| + | |||
| + | ''Arabidopsis'': | ||
Revision as of 18:30, 17 November 2011
General specifications for Textpresso-based CCC Curation
Input
location of files on Textpresso for retrieving paper titles and abstracts
Arabidopsis: /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/
source files for curatable sentences
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
Curation
web-based curation form
Arabidopsis: http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg
postgres table for storing curation
Arabidopsis: ccc_tair_gene_comp_go
Output - three-column or GAF
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
taxon ID
Arabidopsis:
