Difference between revisions of "Gene Ontology"

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==Annotation Practices==
 
==Annotation Practices==
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1. When annotating to Cellular Component terms:
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If a protein contains a transmembrane domain, but localization experiments are not at sufficient resolution to show membrane localization, what annotation should we make?
 +
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Example: CWP-5 in WBPaper00036024
  
  
 
Back to [[Caltech documentation]]
 
Back to [[Caltech documentation]]

Revision as of 15:07, 15 March 2010

Manual Literature Curation

  1. Lung Development Targets (November 2009 - February 2010)

Semi-Automated, Textpresso-Based Curation

  • CCC - GO Cellular Component Curation using Textpresso
  1. dictyBase
  2. FlyBase
  3. TAIR
  4. WormBase
  • MFC - GO Molecular Function Curation using Textpresso

Phenotype2GO Mappings for Biological Process Annotation (Variation2GO and RNAiPhenotype2GO)

InterPro2GO Mappings for IEA Annotations

Reference Genome Inferential Annotations

Term Requests

Annotation Practices

1. When annotating to Cellular Component terms:

If a protein contains a transmembrane domain, but localization experiments are not at sufficient resolution to show membrane localization, what annotation should we make?

Example: CWP-5 in WBPaper00036024


Back to Caltech documentation