Difference between revisions of "Gene Ontology"

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'''Gene Ontology''' curation at WormBase is performed through several different pipelines:
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==Manual Literature Curation==
 
 
1. Manual curation of the literature
 
 
 
2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function
 
 
 
3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)
 
 
 
4. InterPro2GO mappings for sequence-based IEA annotations
 
 
 
5. Reference Genome Inferential Annotations
 
 
 
==Manual curation==
 
 
*Reference Genome (see also [[Reference Genome Inferential Annotations]])
 
*Reference Genome (see also [[Reference Genome Inferential Annotations]])
 
#[[Lung Development Targets (November 2009 - February 2010)]]
 
#[[Lung Development Targets (November 2009 - February 2010)]]
  
== Semi-automated curation ==
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==Semi-Automated, Textpresso-Based Curation==
 
*CCC - GO Cellular Component Curation using Textpresso
 
*CCC - GO Cellular Component Curation using Textpresso
 
#[[dictyBase]]
 
#[[dictyBase]]
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*MFC - GO Molecular Function Curation using Textpresso
 
*MFC - GO Molecular Function Curation using Textpresso
  
== Phenotype2GO pipeline ==
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==Phenotype2GO Mappings for Biological Process Annotation (Variation2GO and RNAiPhenotype2GO)==
 
*[[Phenotype2GO pipeline SOP]]
 
*[[Phenotype2GO pipeline SOP]]
 
*[[Phenotype2GO Mappings File]]
 
*[[Phenotype2GO Mappings File]]

Revision as of 19:45, 6 February 2010

Manual Literature Curation

  1. Lung Development Targets (November 2009 - February 2010)

Semi-Automated, Textpresso-Based Curation

  • CCC - GO Cellular Component Curation using Textpresso
  1. dictyBase
  2. FlyBase
  3. TAIR
  4. WormBase
  • MFC - GO Molecular Function Curation using Textpresso

Phenotype2GO Mappings for Biological Process Annotation (Variation2GO and RNAiPhenotype2GO)

InterPro2GO Mappings for IEA Annotations

Reference Genome Inferential Annotations

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