Difference between revisions of "File Specifications for Downloading Manual Annotations for Protein2GO"
From WormBaseWiki
Jump to navigationJump to searchLine 1: | Line 1: | ||
Background: WormBase will be sending files of its manual GO annotations to be incorporated into Protein2GO. | Background: WormBase will be sending files of its manual GO annotations to be incorporated into Protein2GO. | ||
+ | |||
+ | Details of the migration plan are available on the GO wiki: | ||
+ | |||
+ | http://wiki.geneontology.org/index.php/Procedure_for_migration_of_protein_annotations_to_Protein2GO | ||
'''Summary of Requirements:''' | '''Summary of Requirements:''' | ||
Line 14: | Line 18: | ||
**Ranjana Kishore | **Ranjana Kishore | ||
**Kimberly Van Auken | **Kimberly Van Auken | ||
+ | |||
+ | *Each GAF should be named according to the following convention: | ||
+ | **The file name should be in the format: ‘gene_association.mod.Firstname_Lastname’, e.g. gene_association.wb.Joe_Bloggs |
Revision as of 15:34, 22 January 2013
Background: WormBase will be sending files of its manual GO annotations to be incorporated into Protein2GO.
Details of the migration plan are available on the GO wiki:
http://wiki.geneontology.org/index.php/Procedure_for_migration_of_protein_annotations_to_Protein2GO
Summary of Requirements:
- Separate GAF for each curator
- Remove IEP annotations for gene or transcript
Details of Requirements:
- Separate GAF for each curator
- Carol Bastiani
- Josh Jaffery
- Ranjana Kishore
- Kimberly Van Auken
- Each GAF should be named according to the following convention:
- The file name should be in the format: ‘gene_association.mod.Firstname_Lastname’, e.g. gene_association.wb.Joe_Bloggs