Difference between revisions of "Evidence Code Ontology"
From WormBaseWiki
Jump to navigationJump to searchm |
|||
Line 15: | Line 15: | ||
Narrow ?Text | Narrow ?Text | ||
Related ?Text | Related ?Text | ||
− | + | Parent ?ECO_term XREF Child | |
− | + | Child ?ECO_term XREF Parent | |
− | Attribute_of GO_annotation ?GO_annotation XREF ? | + | Attribute_of GO_annotation ?GO_annotation XREF ?ECO_term |
+ | Disease_model_annotation ?Disease_model_annotation XREF ?ECO_term | ||
+ | Phenotype ?Phenotype XREF ?ECO_term | ||
Index Ancestor ?ECO_term XREF Descendant | Index Ancestor ?ECO_term XREF Descendant | ||
Descendant ?ECO_term XREF Ancestor | Descendant ?ECO_term XREF Ancestor |
Revision as of 14:20, 30 April 2020
Contents
Overview
- The Evidence and Conclusion Ontology is used in WormBase to record evidence used for assertions in curation data models.
- The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.
?ECO_term Model
?ECO_term Name UNIQUE ?Text Status UNIQUE Valid Obsolete Alt_id ?Text Definition UNIQUE ?Text Synonym Broad ?Text Exact ?Text Narrow ?Text Related ?Text Parent ?ECO_term XREF Child Child ?ECO_term XREF Parent Attribute_of GO_annotation ?GO_annotation XREF ?ECO_term Disease_model_annotation ?Disease_model_annotation XREF ?ECO_term Phenotype ?Phenotype XREF ?ECO_term Index Ancestor ?ECO_term XREF Descendant Descendant ?ECO_term XREF Ancestor Version UNIQUE Text
Other models affected for WS278
- Will replace ?GO_code with ?ECO_term in:
- ?GO_annotation
- ?Phenotype
- ?Disease_model_annotation (will eventually replace ?GO_code with ?ECO_term)
- Will remove ?GO_code in:
- ?Cell
Additional model cleanup? Are these tags being used at all?
- ?Gene - remove ?GO_term tag and associated info?
- ?Sequence - remove ?GO_term tag and associated info?
- ?CDS - remove ?GO_term tag and associated info?
- ?Transcript - remove ?GO_term tag and associated info?
Parsing Script for ?ECO_term Model
TO BE ADDED