Difference between revisions of "Entering WBG Articles"
| Line 2: | Line 2: | ||
We would like to enter WBG articles to postgres as soon as they become available on line so they can be incorporated into WormBase as WBPapers. | We would like to enter WBG articles to postgres as soon as they become available on line so they can be incorporated into WormBase as WBPapers. | ||
| + | |||
| + | *Check abstract titles, authors, and affiliations for special characters (e.g. vowels with accents) and convert them to standard characters, since ACeDB doesn't allow special characters. | ||
===General File Format=== | ===General File Format=== | ||
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Here is a general file format for uploading to postgres, followed by a specific example. | Here is a general file format for uploading to postgres, followed by a specific example. | ||
| − | Note that for WBG articles, there are some values that do not change, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated). | + | Note that for WBG articles, there are some values that do not change, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated). Also, the identifiers are created according to the information in the volume, number, and page. These special fields are italicized below. |
| − | Identifier wbg.nn.n.nnnn (where n = a number) | + | ''Identifier wbg.nn.n.nnnn (where n = a number)'' |
| − | Status Valid | + | ''Status Valid'' |
Title First letter capitalized | Title First letter capitalized | ||
| − | Journal Worm Breeder's Gazette | + | ''Journal Worm Breeder's Gazette'' |
Volume nn (where n = a number) | Volume nn (where n = a number) | ||
| Line 31: | Line 33: | ||
URL - corresponds to the URL of the article in the PDF document | URL - corresponds to the URL of the article in the PDF document | ||
| − | Type Gazette_article | + | ''Type Gazette_article'' |
| − | Primary_data not_designated | + | ''Primary_data not_designated'' |
===Specific Example=== | ===Specific Example=== | ||
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A specific example with all information dispayed: | A specific example with all information dispayed: | ||
| − | Identifier wbg18.2.0002 | + | ''Identifier wbg18.2.0002'' |
| − | Status Valid | + | ''Status Valid'' |
Title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes | Title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes | ||
| − | Journal Worm Breeder's Gazette | + | ''Journal Worm Breeder's Gazette'' |
Volume 18 | Volume 18 | ||
| Line 61: | Line 63: | ||
URL http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf | URL http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf | ||
| − | Type Gazette_article | + | ''Type Gazette_article'' |
| − | Primary_data not_designated | + | ''Primary_data not_designated'' |
Back to [[Paper Pipeline]] | Back to [[Paper Pipeline]] | ||
Revision as of 18:05, 13 January 2011
Entering WBG Article into Postgres
We would like to enter WBG articles to postgres as soon as they become available on line so they can be incorporated into WormBase as WBPapers.
- Check abstract titles, authors, and affiliations for special characters (e.g. vowels with accents) and convert them to standard characters, since ACeDB doesn't allow special characters.
General File Format
Here is a general file format for uploading to postgres, followed by a specific example.
Note that for WBG articles, there are some values that do not change, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated). Also, the identifiers are created according to the information in the volume, number, and page. These special fields are italicized below.
Identifier wbg.nn.n.nnnn (where n = a number)
Status Valid
Title First letter capitalized
Journal Worm Breeder's Gazette
Volume nn (where n = a number)
Year 20nn (where n = a number)
Month nn (where n = a number)
Page n or nn (where n = a number)
Author listed as Last Name, First Name//Last Name, First Name//Last Name, First Name etc.
Affiliation list all affiliations
URL - corresponds to the URL of the article in the PDF document
Type Gazette_article
Primary_data not_designated
Specific Example
A specific example with all information dispayed:
Identifier wbg18.2.0002
Status Valid
Title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes
Journal Worm Breeder's Gazette
Volume 18
Year 2010
Month 06
Page 2
Author Giordano-Santini, Rosina//Semple, Jennifer//Dupuy, Denis//Lehner, Ben
Affiliation Genome Regulation and Evolution, Inserm Unit 869, and Institut Europeen de Chimie et Biologie, Bordeaux, France
URL http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf
Type Gazette_article
Primary_data not_designated
Back to Paper Pipeline
