Difference between revisions of "Entering WBG Articles"

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(Created page with 'We would like to enter WBG articles to postgres as soon as they become available on line. Here is a general file format for uploading to postgres, followed by a specific example…')
 
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We would like to enter WBG articles to postgres as soon as they become available on line.
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We would like to enter WBG articles to postgres as soon as they become available on line so they can be incorporated into WormBase as WBPapers.
  
 
Here is a general file format for uploading to postgres, followed by a specific example.  Note that for WBG articles, there are some values that do not change and therefore are not listed, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated).  The identifiers are created according to the information in the volume, number, and page.
 
Here is a general file format for uploading to postgres, followed by a specific example.  Note that for WBG articles, there are some values that do not change and therefore are not listed, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated).  The identifiers are created according to the information in the volume, number, and page.
  
title - First letter capitalized
+
Title - First letter capitalized
volume - nn (where n = a number)
+
 
year - 20nn (where n = a number)
+
Volume - nn (where n = a number)
month - nn (where n = a number)
+
 
page - n or nn (where n = a number)
+
Year - 20nn (where n = a number)
author - listed as Last Name, First Name//Last Name, First Name//Last Name, First Name  etc.
+
 
affiliation - list all affiliations
+
Month - nn (where n = a number)
url - corresponds to the URL of the article in the PDF document
+
 
 +
Page - n or nn (where n = a number)
 +
 
 +
Author - listed as Last Name, First Name//Last Name, First Name//Last Name, First Name  etc.
 +
 
 +
Affiliation - list all affiliations
 +
 
 +
URL - corresponds to the URL of the article in the PDF document
 +
 
  
 
A specific example with all information dispayed:
 
A specific example with all information dispayed:
  
identifier wbg18.2.0002
+
Identifier wbg18.2.0002
status Valid
+
 
title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes
+
Status Valid
volume 18
+
 
year 2010
+
Title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes
month 06
+
 
page 2
+
Journal Worm Breeder's Gazette
author Giordano-Santini, Rosina//Semple, Jennifer//Dupuy, Denis//Lehner, Ben
+
 
affiliation Genome Regulation and Evolution, Inserm Unit 869, and Institut Europeen de Chimie et Biologie, Bordeaux, France
+
Volume 18
url http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf
+
 
 +
Year 2010
 +
 
 +
Month 06
 +
 
 +
Page 2
 +
 
 +
Author Giordano-Santini, Rosina//Semple, Jennifer//Dupuy, Denis//Lehner, Ben
 +
 
 +
Affiliation Genome Regulation and Evolution, Inserm Unit 869, and Institut Europeen de Chimie et Biologie, Bordeaux, France
 +
 
 +
URL http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf
 +
 
 
Type Gazette_article
 
Type Gazette_article
 +
 
Primary_data not_designated
 
Primary_data not_designated

Revision as of 17:52, 13 January 2011

We would like to enter WBG articles to postgres as soon as they become available on line so they can be incorporated into WormBase as WBPapers.

Here is a general file format for uploading to postgres, followed by a specific example. Note that for WBG articles, there are some values that do not change and therefore are not listed, e.g. Status (valid), Type (Gazette_article), Journal (Worm Breeder's Gazette), and Primary_data (not_designated). The identifiers are created according to the information in the volume, number, and page.

Title - First letter capitalized

Volume - nn (where n = a number)

Year - 20nn (where n = a number)

Month - nn (where n = a number)

Page - n or nn (where n = a number)

Author - listed as Last Name, First Name//Last Name, First Name//Last Name, First Name etc.

Affiliation - list all affiliations

URL - corresponds to the URL of the article in the PDF document


A specific example with all information dispayed:

Identifier wbg18.2.0002

Status Valid

Title Antibiotic markers for rapid selection and easy maintenance of transgenic nematodes

Journal Worm Breeder's Gazette

Volume 18

Year 2010

Month 06

Page 2

Author Giordano-Santini, Rosina//Semple, Jennifer//Dupuy, Denis//Lehner, Ben

Affiliation Genome Regulation and Evolution, Inserm Unit 869, and Institut Europeen de Chimie et Biologie, Bordeaux, France

URL http://www.wormbook.org/wbg/volumes/volume-18-number-2/pdf/wbg-volume-18-number-2.02.pdf

Type Gazette_article

Primary_data not_designated