Dumping Script

The dumping script lives here:

/home/postgres/work/citace_upload/papers/dumpPapAce.pl

The dumping script will check for any dead gene IDs attached to papers and comment them out of the .ace file until they are fixed/deleted from postgres by a curator.

The AQL query that finds all dead genes in WB is:

select all class gene where ->Species like "*elegans" and ->Status like "Dead"

Back to 2010_-_Paper_Pipeline:_Documentation_and_Instructions

The dumping script will also check that all associated genes are in the format: WBGenennnnnnnn where the 8 n's correspond to numbers.