Difference between revisions of "DictyBase"
From WormBaseWiki
Jump to navigationJump to searchLine 3: | Line 3: | ||
# Implement Textpresso 2.5 for dictyBase - Arun DONE | # Implement Textpresso 2.5 for dictyBase - Arun DONE | ||
− | # Automating dicty literature upload - Arun, Petra, Sidd | + | ## Automating dicty literature upload - Arun, Petra, Sidd |
− | # Clone CCC curation form for dictyBase - Juancarlos | + | ### Clone CCC curation form for dictyBase - Juancarlos |
− | # Test searches - from web site or by script? - Arun, Kimberly, Juancarlos | + | #### Test searches - from web site or by script? - Arun, Kimberly, Juancarlos |
− | # dicty curation - Petra, Kimberly | + | ##### dicty curation - Petra, Kimberly |
− | # Output files - Petra, Kimberly, Sidd, Juancarlos | + | ###### Output files - Petra, Kimberly, Sidd, Juancarlos |
==Previous Work - 2009/2010== | ==Previous Work - 2009/2010== |
Revision as of 17:23, 19 April 2011
CCC for dicty Timeline - 2011
- Implement Textpresso 2.5 for dictyBase - Arun DONE
- Automating dicty literature upload - Arun, Petra, Sidd
- Clone CCC curation form for dictyBase - Juancarlos
- Test searches - from web site or by script? - Arun, Kimberly, Juancarlos
- dicty curation - Petra, Kimberly
- Output files - Petra, Kimberly, Sidd, Juancarlos
Previous Work - 2009/2010
Proposed Curation Pipeline
- New papers are processed with an SVM developed for dicty cellular component curation
- Sentences from resulting positives (confidence level TBD) are subject to Textpresso category searches
- Positive sentences are presented to curators along with suggested GO terms and GO IDs
11/11/2009 Pascale, Petra finished uploading of dicty papers for Cellular Component SVM.
11/20/2009 Status of SVM?
11/20/2009 Categories on dicty site - two groups of CCC categories, remove Curator Specific categories?
04/07/2010 Awaiting analysis of dicty SVM - high confidence positives and checkFN file.
Back to Gene Ontology