Difference between revisions of "Data contained in WormMine"
From WormBaseWiki
Jump to navigationJump to searchLine 48: | Line 48: | ||
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| Gene metadata | | Gene metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Transcript metadata | | Transcript metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| CDS metadata | | CDS metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Variation metadata | | Variation metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Protein metadata | | Protein metadata | ||
− | || | + | || Select fields extracted from Ace |
|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Phenotype metadata | | Phenotype metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Expression Pattern metadata | | Expression Pattern metadata | ||
− | || | + | || Select fields extracted from Ace |
|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Anatomy Term metadata | | Anatomy Term metadata | ||
− | || | + | || Select fields extracted from Ace |
|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Expression Cluster metadata | | Expression Cluster metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Life Stage metadata | | Life Stage metadata | ||
− | || | + | || Select fields extracted from Ace |
|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB |
Revision as of 20:20, 2 May 2013
This lists all data sources contained in WormMine
Source | Description | Source | Species | Data mapping |
---|---|---|---|---|
GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Gene metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Transcript metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
CDS metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Variation metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Protein metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Phenotype metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Expression Pattern metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Anatomy Term metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Expression Cluster metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Life Stage metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |